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The map label for this gene is xynA [H]

Identifier: 21244966

GI number: 21244966

Start: 5013679

End: 5014824

Strand: Reverse

Name: xynA [H]

Synonym: XAC4249

Alternate gene names: 21244966

Gene position: 5014824-5013679 (Counterclockwise)

Preceding gene: 77748769

Following gene: 21244965

Centisome position: 96.89

GC content: 62.04

Gene sequence:

>1146_bases
TTGCTGATCGCCGGCCTGAGTGCAGTGTGCACACTGCAGGCCTTCGCCGCATGCGGGACGCCCGGCACCTCGCTCAAGCA
GGCGTATGCGCAAGGGTTTTTGCTCGGGACTGCCGTCAATGCCGATATCGTCTCCGGCAAGGACGCAGCCTCTGCTGCGC
TGGTGGCCTGTCACTTCAATGCGGTCACCGCGGAAAACGTGATGAAGGCCGAAGTGGTGGCGCCGCGTCGTGGCGTGCAG
GATTTCAGCGCGGCCGATGCATTCGTGGCTTACGCACAGCGCGATCGGCAGTTCGTGGTCGGTCACACCCTGGTCTGGCA
CAACCAGACACCGGAGTGGTTCTTCACCACCGCCGATGGTCGGCCCAATACGCCGGCACAGCAGCTGGAGCGCATGCGCG
CGCATATCGCAGCGGTGGCCGGGCGTTACACGGGCAAGGTGCAAGCCTGGGATGTGGTCAACGAAATCATCGACGAAGAC
GGCAGTTACCGTTCGACCAACTGGGTGCAGCGCGTGGGCGACGGCGACACGGTGGTCCGCAATGCCTTCGCCTTCGCACA
GCGCTATGCACCGGATGCGCAGCTCTACTACAACGATTTCAATGCATGGCGGCCGGCCAAGCGCGAGGGCATCGTGCGCA
TGGTCAAGATGCTGCAGCAGGCCGGTGTCCGCATCGATGGCGTGGGCATGCAGGGCCATTGGGGGCTGAACTACCCCAGC
CTGCGCGATATCGAAGACGCAATCGATGCGTACGCTGCGCTTGGCGTCAAAGTGATGATCACCGAGCTGGACATCGATGT
GTTGCCGCTCACCAAGGAAGGCCAGATCATCGGTACCGGCATGGCGCACAAGCAGTTTCAACTGCCGGAATTCAAGCGTT
TTCTCGACCCCTATCGCGATGGTTTGCCTGCCGACGTGCAGGCGCAATTGCGCGACCGGTATGCCGAATTGTTCGCGTTG
TTCTGGCGCAAGCGCGACAAGATTGCGCGCGTCAGCGTGTGGGGAGTGAGCGATGACATGTCGTGGAAAAACGATTACCC
GGTGCCTGGACGCACCAATTATCCGCTGCTGTTCGATCGCAATCATCAACCCAAACCGGCGTTGGATGCGGTGGTGGCGG
TGCCCTCCGCGACCGCTGCACGCTAG

Upstream 100 bases:

>100_bases
TGGCGGTGCAGTGATGCGATCCAGTGCAAGCGAAACCTGCGGCCTCTCAACGGACCTGCCCATGCACATCAACCGCACCA
ACCTCACCAAACCCCTGGGC

Downstream 100 bases:

>100_bases
CGCCTGCCGGCCGAAGAGCGGCTGACGACCAGCGCCCAGGCAACAGGCGGGCACGGCCGATGTTCGTGCGGCATGGCTTG
CTCGAACTCCGCATTCCTGC

Product: endo-1,4-beta-xylanase A

Products: NA

Alternate protein names: Xylanase A; 1,4-beta-D-xylan xylanohydrolase A [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MLIAGLSAVCTLQAFAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAASAALVACHFNAVTAENVMKAEVVAPRRGVQ
DFSAADAFVAYAQRDRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLERMRAHIAAVAGRYTGKVQAWDVVNEIIDED
GSYRSTNWVQRVGDGDTVVRNAFAFAQRYAPDAQLYYNDFNAWRPAKREGIVRMVKMLQQAGVRIDGVGMQGHWGLNYPS
LRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEFKRFLDPYRDGLPADVQAQLRDRYAELFAL
FWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAVVAVPSATAAR

Sequences:

>Translated_381_residues
MLIAGLSAVCTLQAFAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAASAALVACHFNAVTAENVMKAEVVAPRRGVQ
DFSAADAFVAYAQRDRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLERMRAHIAAVAGRYTGKVQAWDVVNEIIDED
GSYRSTNWVQRVGDGDTVVRNAFAFAQRYAPDAQLYYNDFNAWRPAKREGIVRMVKMLQQAGVRIDGVGMQGHWGLNYPS
LRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEFKRFLDPYRDGLPADVQAQLRDRYAELFAL
FWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAVVAVPSATAAR
>Mature_381_residues
MLIAGLSAVCTLQAFAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAASAALVACHFNAVTAENVMKAEVVAPRRGVQ
DFSAADAFVAYAQRDRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLERMRAHIAAVAGRYTGKVQAWDVVNEIIDED
GSYRSTNWVQRVGDGDTVVRNAFAFAQRYAPDAQLYYNDFNAWRPAKREGIVRMVKMLQQAGVRIDGVGMQGHWGLNYPS
LRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEFKRFLDPYRDGLPADVQAQLRDRYAELFAL
FWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAVVAVPSATAAR

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 42169; Mature: 42169

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAGLSAVCTLQAFAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAASAALVACHFN
CEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCEECCCCHHHHEEEEEECC
AVTAENVMKAEVVAPRRGVQDFSAADAFVAYAQRDRQFVVGHTLVWHNQTPEWFFTTADG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCC
RPNTPAQQLERMRAHIAAVAGRYTGKVQAWDVVNEIIDEDGSYRSTNWVQRVGDGDTVVR
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHH
NAFAFAQRYAPDAQLYYNDFNAWRPAKREGIVRMVKMLQQAGVRIDGVGMQGHWGLNYPS
HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
LRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEFKRFLDPYRD
HHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHC
GLPADVQAQLRDRYAELFALFWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC
NHQPKPALDAVVAVPSATAAR
CCCCCHHHHHEEECCCCCCCC
>Mature Secondary Structure
MLIAGLSAVCTLQAFAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAASAALVACHFN
CEECCHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCEECCCCHHHHEEEEEECC
AVTAENVMKAEVVAPRRGVQDFSAADAFVAYAQRDRQFVVGHTLVWHNQTPEWFFTTADG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCC
RPNTPAQQLERMRAHIAAVAGRYTGKVQAWDVVNEIIDEDGSYRSTNWVQRVGDGDTVVR
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHH
NAFAFAQRYAPDAQLYYNDFNAWRPAKREGIVRMVKMLQQAGVRIDGVGMQGHWGLNYPS
HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
LRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEFKRFLDPYRD
HHHHHHHHHHHHHCCEEEEEEEECCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHC
GLPADVQAQLRDRYAELFALFWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC
NHQPKPALDAVVAVPSATAAR
CCCCCHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7766665 [H]