Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is gnl [H]
Identifier: 21244965
GI number: 21244965
Start: 5012434
End: 5013471
Strand: Reverse
Name: gnl [H]
Synonym: XAC4248
Alternate gene names: 21244965
Gene position: 5013471-5012434 (Counterclockwise)
Preceding gene: 21244966
Following gene: 21244963
Centisome position: 96.87
GC content: 66.18
Gene sequence:
>1038_bases ATGCGCTTGCCGCCTTATCTGCTGTTGGCCGTGCCGTTGCTGGCGGTGCTTGCTGCGTGCACCAAGCAGACTCCACCGAC GCCGCGTTTTGCGGCCATTGGCCAGCTGCAGACATTCGACCGCCGCTTCAGTGAGGCGGTCGCAAGCGATGCGCGCATCG AGAAGCTCGCCGAAGGCTTCACCTGGTCCGAAGGCCCGGCATGGGTGCGCAGCGGAGGCTATCTGTTGTTCACGGATGTG CCGGAAAACACGCTGTATCGCTGGTCCGAACAGGCCGGCCTGTCGGTCTTGCTGTCGCCCTCCGGCTACACCGGCCCGGA GCTGCCCACGCTGCGCGAGGCCGGCGCCAATGGTCTGTACGCCGAGCCCGACGGCACGGTGCTGCTGGCCGATTCCGGCA CGCGCATCCTGGCCCGGCTCGATCCGGTCACGCGCAAGAAGACGCCGCTTGCGACCACCTTCGAGGGCCACCGTTTCAAC AGCCCCAACGATGTCGTGCGACGCAGCGATGGCGTGGTGTTCTTCACCGACCCGCCGTACGGGTTGAAGGACCTGGATAA ATCGCCGGTCAAGGAGTTGCGCTTCAATGGCGTCTATCGCCTGGACACCGATGGCAGCGTGCATCTGCTGGACGATGGCC TGAGCTTTCCCAACGGCATTGCCCTGTCGCCGGATGCGCGCACCTTGTACGTCTCCAACTCCGATCCGCAACGGCCGATC TGGATGGCTTATGCACTGGATGCGCAGGGCGCCGTCACCGGCAAGCGGGTGTTTGCCGATGCATCGGACCTGATCGCCAA GGATGTGCCCGGCCTGCCCGACGGCATGGCCGTGGCCGCCGACGGCACGCTGTTTGCCACCGGCCCTGGCGGCGTGATCG TCTTCGATCCCGCCGGCCAACGGTTGGGTCGCATCGCCACCGGCGAGGCCGTCTCCAACTGCGCCTTCGGCAACGATGGC CACATGCTGTACATGACCTCGCACGCGATGCTGGCGCGCGTGCGCGTGAAGTCGCTGGGCCTGCAGTTCGCGCGCTAG
Upstream 100 bases:
>100_bases GCACGTCACAGATGGGTGCGCGACGCGTTGGTCGGCGCTAGGGCAGTCGCTTGCACACGCAGGATGGCATCACGCCCCGA CCATGAGACAGGACTGACCG
Downstream 100 bases:
>100_bases AGCGTGTTATGCATTTTGAGATGAGATGCGTTGGCCGCCGGCGGAGCGGAGCGGGTGCTGCGTGGCGCCGGCTTGGCTGG CGCCAAGGCAAGCCGCACGC
Product: gluconolactonase
Products: NA
Alternate protein names: D-glucono-delta-lactone lactonohydrolase [H]
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MRLPPYLLLAVPLLAVLAACTKQTPPTPRFAAIGQLQTFDRRFSEAVASDARIEKLAEGFTWSEGPAWVRSGGYLLFTDV PENTLYRWSEQAGLSVLLSPSGYTGPELPTLREAGANGLYAEPDGTVLLADSGTRILARLDPVTRKKTPLATTFEGHRFN SPNDVVRRSDGVVFFTDPPYGLKDLDKSPVKELRFNGVYRLDTDGSVHLLDDGLSFPNGIALSPDARTLYVSNSDPQRPI WMAYALDAQGAVTGKRVFADASDLIAKDVPGLPDGMAVAADGTLFATGPGGVIVFDPAGQRLGRIATGEAVSNCAFGNDG HMLYMTSHAMLARVRVKSLGLQFAR
Sequences:
>Translated_345_residues MRLPPYLLLAVPLLAVLAACTKQTPPTPRFAAIGQLQTFDRRFSEAVASDARIEKLAEGFTWSEGPAWVRSGGYLLFTDV PENTLYRWSEQAGLSVLLSPSGYTGPELPTLREAGANGLYAEPDGTVLLADSGTRILARLDPVTRKKTPLATTFEGHRFN SPNDVVRRSDGVVFFTDPPYGLKDLDKSPVKELRFNGVYRLDTDGSVHLLDDGLSFPNGIALSPDARTLYVSNSDPQRPI WMAYALDAQGAVTGKRVFADASDLIAKDVPGLPDGMAVAADGTLFATGPGGVIVFDPAGQRLGRIATGEAVSNCAFGNDG HMLYMTSHAMLARVRVKSLGLQFAR >Mature_345_residues MRLPPYLLLAVPLLAVLAACTKQTPPTPRFAAIGQLQTFDRRFSEAVASDARIEKLAEGFTWSEGPAWVRSGGYLLFTDV PENTLYRWSEQAGLSVLLSPSGYTGPELPTLREAGANGLYAEPDGTVLLADSGTRILARLDPVTRKKTPLATTFEGHRFN SPNDVVRRSDGVVFFTDPPYGLKDLDKSPVKELRFNGVYRLDTDGSVHLLDDGLSFPNGIALSPDARTLYVSNSDPQRPI WMAYALDAQGAVTGKRVFADASDLIAKDVPGLPDGMAVAADGTLFATGPGGVIVFDPAGQRLGRIATGEAVSNCAFGNDG HMLYMTSHAMLARVRVKSLGLQFAR
Specific function: Hydrolyzes the gluconolactone formed by glucose-fructose oxidoreductase, and that formed in aerobic conditions by the glucose dehydrogenase present [H]
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 - InterPro: IPR006311 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: =3.1.1.17 [H]
Molecular weight: Translated: 37087; Mature: 37087
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPPYLLLAVPLLAVLAACTKQTPPTPRFAAIGQLQTFDRRFSEAVASDARIEKLAEGF CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TWSEGPAWVRSGGYLLFTDVPENTLYRWSEQAGLSVLLSPSGYTGPELPTLREAGANGLY CCCCCCCEEECCCEEEEEECCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCCCCE AEPDGTVLLADSGTRILARLDPVTRKKTPLATTFEGHRFNSPNDVVRRSDGVVFFTDPPY ECCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEECCCCC GLKDLDKSPVKELRFNGVYRLDTDGSVHLLDDGLSFPNGIALSPDARTLYVSNSDPQRPI CHHHCCCCHHHHHHCCCEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCCE WMAYALDAQGAVTGKRVFADASDLIAKDVPGLPDGMAVAADGTLFATGPGGVIVFDPAGQ EEEEEECCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCEEEEECCCCEEEECCCCH RLGRIATGEAVSNCAFGNDGHMLYMTSHAMLARVRVKSLGLQFAR HHCCEECCCHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRLPPYLLLAVPLLAVLAACTKQTPPTPRFAAIGQLQTFDRRFSEAVASDARIEKLAEGF CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TWSEGPAWVRSGGYLLFTDVPENTLYRWSEQAGLSVLLSPSGYTGPELPTLREAGANGLY CCCCCCCEEECCCEEEEEECCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCCCCCCE AEPDGTVLLADSGTRILARLDPVTRKKTPLATTFEGHRFNSPNDVVRRSDGVVFFTDPPY ECCCCEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEECCCCC GLKDLDKSPVKELRFNGVYRLDTDGSVHLLDDGLSFPNGIALSPDARTLYVSNSDPQRPI CHHHCCCCHHHHHHCCCEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCCE WMAYALDAQGAVTGKRVFADASDLIAKDVPGLPDGMAVAADGTLFATGPGGVIVFDPAGQ EEEEEECCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCEEEEECCCCEEEECCCCH RLGRIATGEAVSNCAFGNDGHMLYMTSHAMLARVRVKSLGLQFAR HHCCEECCCHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1482681 [H]