Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is lacZ [H]
Identifier: 77748769
GI number: 77748769
Start: 5014911
End: 5017580
Strand: Reverse
Name: lacZ [H]
Synonym: XAC4250
Alternate gene names: 77748769
Gene position: 5017580-5014911 (Counterclockwise)
Preceding gene: 21244968
Following gene: 21244966
Centisome position: 96.95
GC content: 65.99
Gene sequence:
>2670_bases ATGGCAGCACCGCACCCGGCCAGCGACGCCTCGCGCGAACGTATTTCGCTCAATGCGCAGTGGCGCTTTCATCGTGGCGA CCCACCCGCAAACCAGGAAATCCTGGACTACGATGTGCGCCCGCAGGTGGTGCGCAGCGATGACGGCAAGGTGGCCGATG CGCAACCGGAGCAAGCGCAGCTCACCGATGCGTCCGCCGTGCGCGTGCTCAAGCCGTGGATCCTGCCCACCGCCAACGGC TTGATCGCAGACCCGGCCCAGCGGCACACGCGCCCCCCAGGCAACCCGGGCAGCACGGTGGCTTATGTGCAGCCGCACTT CGACGACAGCGCATGGGAAACCGTGGACCTGCCACATGACTGGGCCATTGCCGGGCCGTTCCTGGCAAATGGGCCTTACG GTGGCATGGGCCGGTTGCCGAGCTGGGGCATTGGCTGGTATCGCAAGAGCCTGGACATCCCAGCCAGCGATCGCGGCCGC GCGTTGTTTCTGGATCTCGATGGTGCGATGTCTTACGCCACGGTCTGGCTCAACGGCACCCTTGTCGGCGGATGGCCTTA CGGGTACAGCTCCTGGCGCGTGGATCTGACGCCGTATGTGATTGCAGGTAAGCGCAATCAACTGGTCATTCGCCTGGACA ACCCGCCCGAATCGGCGCGTTGGTATCCGGGCGGCGGGCTGTATCGCAACGTGTGGCTGACCAAAACGGCGCCGTTGCAT ATCGCGCATTGGGGCACGCAGCTGACCACGCCGCACGTTTCGGCCGATGCGGCGCAGGTGCAGCTGACCGTCACGCTGGA CAACGCCGCCCGCAGCGCCACCCAGGCGCAGGTGAGCACAGCGATCTATCTGCTCGACGATGCAAGCGACCGGCCCAGCG GCGAGGCGGTCGCGCGCATTCCAGCGCAGCCCATCGCGGTCCCTGCCGGCGGCACCGCGCACGTGCAAGGCAGTACCCGG ATCGACGCCCCGCGCCTGTGGGGGCCTCCACCCACGCAGCAACCGCATCGCTATGTGGCCATCACCGAGGTTGGCCAGCA GGGGCACGTGGTGGACCGCTACGAAACCCGCTTCGGCATTCGCAGCATCGTGTTCGACGCCGACAGGGGCCTACTGGTCA ATGGCGAGCACGTGCCGATCCGCGGGGTGAACAATCATCACGACCTGGGCGCGCTCGGTGCGGCGTTCAACAGACGCGCC GCCGAGCGGCAGTTGCAATTGCTGCAGCAGATGGGCGCCAATGCCATTCGCATGAGCCATAACCCGCCTGCGCCCGAGTT GCTCGAGCTGACCGACCGCATGGGCCTGCTGGTGGTGGATGAGGTGTTCGACAGTTGGGAGATGAAGAAGACCCCGCTGG ATTTCCATCTGGTGTTTCCGCAGTGGCATGCCACCGATCTGCGCGCGATGCTGCGCCGCGACCGCAATCATCCTTCGGTG ATGCTATGGAGCGTGGGCAACGAGGTTGGCGAGCAATACACCGGCGAACAGGGCGCGGCGATTGCGCGCGCGCTGCGCGC CATCGTGCATGCAGAAGACCCGACGCGCCCGGCCGCGGTGGCGATGAACTACGCCTCGCCCGAGATGCCGTTGTCCGCCG CGCTGGATGTCGTCAGCCTCAATTACCAGGGGGAAGGCATCCGCGATGCAGCCGAGTTCGAGGGCACGCAGCGCATCCGT AAGCCGCCGCAATACCCGGCGTTTCATGCACGGTTTCCGCACAAGGCCATCGTCAGCAGCGAGACTGCCTCGGCACTGAG CAGTCGTGGCGTGTATCTGTTTCCGGTTACTCCGGACAACAGCGCGCCGGTACGCGATGGCCGTGGCGGCGATTCGGCGG CGCATCAGGTCAGCGCGTACGAGCTGCATGCCGTGGATTTCGGCTCCAGTGCCGACAAGGTGTTCGCTGCGTTGGATCGA CACCCGTACGTCGCCGGCGAGTTCGTCTGGACCGGGTTCGATTACCTGGGCGAGCCCACCCCGTATTACAGCTCGCGCAG TTCCTACTCGGGCATCTTCGATCTGGCCGGCTTTCCGAAGGACCGTTACTGGCTCTATCAATCGCGCTGGCGCCCGGAAT TGCCGGTGGCGCATCTGCTGCCGCATTGGAGCTGGCCAGGGCGCGAGGGACAGGTCACGCCCGTGCATGTGTTCACCTCC GGCGACGAGGCCGAACTGTTCGTCAATGGCGTCTCGCAGGGGCGCAAGCGCAAGGCGCCACTGCAGTACCGGCTACGCTG GGACGCGGTGGTGTACCAGCCGGGCGAATTGCAGATGCAGGCGTACAAGGATGGCAAGCCGTGGGCCAGCGAGCGCGTGC AGACAGCAGGCCGCGCCGCGCGCATGCAGCTGATGCCAGATCGGGGCAGTATCCGCGGCGACGGACAGGACCTGAGTTTC ATCACCGTGCGCCTGCTCGATCGCGACGGACGTCCTGCGCCGACCGCGGGCGACCGCCTGCGCTTCCGCATCGAAGGCCC GGGCGAGTTGGTGGCCACCGACAACGGCGATCCCACCAATCTGGAAACATTCGCCTCTTCGCAGCGTCATGCCTTCAACG GGCTGTGCCTGGCGATCGTGCGTGCCAAGGCCGGGGCGCGTGGCACGATCACCGTGCATGTGGAATCGGACACGTTGCAA GCCGCACAGACACAGGTGGCGGTGCAGTGA
Upstream 100 bases:
>100_bases GCGTACACACGCCAAGCACAACGTCACACGACAGCTGCTCGCAGCTTGCGCAGTACGTGCCTGCACAGGGGTTGTCTGGC TCTGCAGCGCATTGCCTATC
Downstream 100 bases:
>100_bases TGCGATCCAGTGCAAGCGAAACCTGCGGCCTCTCAACGGACCTGCCCATGCACATCAACCGCACCAACCTCACCAAACCC CTGGGCTTGCTGATCGCCGG
Product: beta-galactosidase
Products: NA
Alternate protein names: Beta-gal; Lactase [H]
Number of amino acids: Translated: 889; Mature: 888
Protein sequence:
>889_residues MAAPHPASDASRERISLNAQWRFHRGDPPANQEILDYDVRPQVVRSDDGKVADAQPEQAQLTDASAVRVLKPWILPTANG LIADPAQRHTRPPGNPGSTVAYVQPHFDDSAWETVDLPHDWAIAGPFLANGPYGGMGRLPSWGIGWYRKSLDIPASDRGR ALFLDLDGAMSYATVWLNGTLVGGWPYGYSSWRVDLTPYVIAGKRNQLVIRLDNPPESARWYPGGGLYRNVWLTKTAPLH IAHWGTQLTTPHVSADAAQVQLTVTLDNAARSATQAQVSTAIYLLDDASDRPSGEAVARIPAQPIAVPAGGTAHVQGSTR IDAPRLWGPPPTQQPHRYVAITEVGQQGHVVDRYETRFGIRSIVFDADRGLLVNGEHVPIRGVNNHHDLGALGAAFNRRA AERQLQLLQQMGANAIRMSHNPPAPELLELTDRMGLLVVDEVFDSWEMKKTPLDFHLVFPQWHATDLRAMLRRDRNHPSV MLWSVGNEVGEQYTGEQGAAIARALRAIVHAEDPTRPAAVAMNYASPEMPLSAALDVVSLNYQGEGIRDAAEFEGTQRIR KPPQYPAFHARFPHKAIVSSETASALSSRGVYLFPVTPDNSAPVRDGRGGDSAAHQVSAYELHAVDFGSSADKVFAALDR HPYVAGEFVWTGFDYLGEPTPYYSSRSSYSGIFDLAGFPKDRYWLYQSRWRPELPVAHLLPHWSWPGREGQVTPVHVFTS GDEAELFVNGVSQGRKRKAPLQYRLRWDAVVYQPGELQMQAYKDGKPWASERVQTAGRAARMQLMPDRGSIRGDGQDLSF ITVRLLDRDGRPAPTAGDRLRFRIEGPGELVATDNGDPTNLETFASSQRHAFNGLCLAIVRAKAGARGTITVHVESDTLQ AAQTQVAVQ
Sequences:
>Translated_889_residues MAAPHPASDASRERISLNAQWRFHRGDPPANQEILDYDVRPQVVRSDDGKVADAQPEQAQLTDASAVRVLKPWILPTANG LIADPAQRHTRPPGNPGSTVAYVQPHFDDSAWETVDLPHDWAIAGPFLANGPYGGMGRLPSWGIGWYRKSLDIPASDRGR ALFLDLDGAMSYATVWLNGTLVGGWPYGYSSWRVDLTPYVIAGKRNQLVIRLDNPPESARWYPGGGLYRNVWLTKTAPLH IAHWGTQLTTPHVSADAAQVQLTVTLDNAARSATQAQVSTAIYLLDDASDRPSGEAVARIPAQPIAVPAGGTAHVQGSTR IDAPRLWGPPPTQQPHRYVAITEVGQQGHVVDRYETRFGIRSIVFDADRGLLVNGEHVPIRGVNNHHDLGALGAAFNRRA AERQLQLLQQMGANAIRMSHNPPAPELLELTDRMGLLVVDEVFDSWEMKKTPLDFHLVFPQWHATDLRAMLRRDRNHPSV MLWSVGNEVGEQYTGEQGAAIARALRAIVHAEDPTRPAAVAMNYASPEMPLSAALDVVSLNYQGEGIRDAAEFEGTQRIR KPPQYPAFHARFPHKAIVSSETASALSSRGVYLFPVTPDNSAPVRDGRGGDSAAHQVSAYELHAVDFGSSADKVFAALDR HPYVAGEFVWTGFDYLGEPTPYYSSRSSYSGIFDLAGFPKDRYWLYQSRWRPELPVAHLLPHWSWPGREGQVTPVHVFTS GDEAELFVNGVSQGRKRKAPLQYRLRWDAVVYQPGELQMQAYKDGKPWASERVQTAGRAARMQLMPDRGSIRGDGQDLSF ITVRLLDRDGRPAPTAGDRLRFRIEGPGELVATDNGDPTNLETFASSQRHAFNGLCLAIVRAKAGARGTITVHVESDTLQ AAQTQVAVQ >Mature_888_residues AAPHPASDASRERISLNAQWRFHRGDPPANQEILDYDVRPQVVRSDDGKVADAQPEQAQLTDASAVRVLKPWILPTANGL IADPAQRHTRPPGNPGSTVAYVQPHFDDSAWETVDLPHDWAIAGPFLANGPYGGMGRLPSWGIGWYRKSLDIPASDRGRA LFLDLDGAMSYATVWLNGTLVGGWPYGYSSWRVDLTPYVIAGKRNQLVIRLDNPPESARWYPGGGLYRNVWLTKTAPLHI AHWGTQLTTPHVSADAAQVQLTVTLDNAARSATQAQVSTAIYLLDDASDRPSGEAVARIPAQPIAVPAGGTAHVQGSTRI DAPRLWGPPPTQQPHRYVAITEVGQQGHVVDRYETRFGIRSIVFDADRGLLVNGEHVPIRGVNNHHDLGALGAAFNRRAA ERQLQLLQQMGANAIRMSHNPPAPELLELTDRMGLLVVDEVFDSWEMKKTPLDFHLVFPQWHATDLRAMLRRDRNHPSVM LWSVGNEVGEQYTGEQGAAIARALRAIVHAEDPTRPAAVAMNYASPEMPLSAALDVVSLNYQGEGIRDAAEFEGTQRIRK PPQYPAFHARFPHKAIVSSETASALSSRGVYLFPVTPDNSAPVRDGRGGDSAAHQVSAYELHAVDFGSSADKVFAALDRH PYVAGEFVWTGFDYLGEPTPYYSSRSSYSGIFDLAGFPKDRYWLYQSRWRPELPVAHLLPHWSWPGREGQVTPVHVFTSG DEAELFVNGVSQGRKRKAPLQYRLRWDAVVYQPGELQMQAYKDGKPWASERVQTAGRAARMQLMPDRGSIRGDGQDLSFI TVRLLDRDGRPAPTAGDRLRFRIEGPGELVATDNGDPTNLETFASSQRHAFNGLCLAIVRAKAGARGTITVHVESDTLQA AQTQVAVQ
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI268834192, Length=574, Percent_Identity=24.7386759581882, Blast_Score=132, Evalue=2e-30, Organism=Escherichia coli, GI1787903, Length=611, Percent_Identity=25.0409165302782, Blast_Score=122, Evalue=7e-29, Organism=Escherichia coli, GI48994920, Length=407, Percent_Identity=25.5528255528256, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1786539, Length=448, Percent_Identity=26.5625, Blast_Score=91, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17510825, Length=417, Percent_Identity=24.7002398081535, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI62471735, Length=573, Percent_Identity=23.3856893542757, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI19922582, Length=573, Percent_Identity=23.3856893542757, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI24651745, Length=556, Percent_Identity=24.6402877697842, Blast_Score=115, Evalue=2e-25, Organism=Drosophila melanogaster, GI24655438, Length=573, Percent_Identity=23.3856893542757, Blast_Score=115, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003344 - InterPro: IPR008979 - InterPro: IPR006101 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR006103 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02836 Glyco_hydro_2_C; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 97794; Mature: 97662
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS00608 GLYCOSYL_HYDROL_F2_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPHPASDASRERISLNAQWRFHRGDPPANQEILDYDVRPQVVRSDDGKVADAQPEQAQ CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCHHH LTDASAVRVLKPWILPTANGLIADPAQRHTRPPGNPGSTVAYVQPHFDDSAWETVDLPHD CCCHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCC WAIAGPFLANGPYGGMGRLPSWGIGWYRKSLDIPASDRGRALFLDLDGAMSYATVWLNGT CEEECCEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEECE LVGGWPYGYSSWRVDLTPYVIAGKRNQLVIRLDNPPESARWYPGGGLYRNVWLTKTAPLH EEECCCCCCCCEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEE IAHWGTQLTTPHVSADAAQVQLTVTLDNAARSATQAQVSTAIYLLDDASDRPSGEAVARI EEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHEEEEEEEEEECCCCCCCCCEEEEC PAQPIAVPAGGTAHVQGSTRIDAPRLWGPPPTQQPHRYVAITEVGQQGHVVDRYETRFGI CCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHCC RSIVFDADRGLLVNGEHVPIRGVNNHHDLGALGAAFNRRAAERQLQLLQQMGANAIRMSH EEEEEECCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC NPPAPELLELTDRMGLLVVDEVFDSWEMKKTPLDFHLVFPQWHATDLRAMLRRDRNHPSV CCCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE MLWSVGNEVGEQYTGEQGAAIARALRAIVHAEDPTRPAAVAMNYASPEMPLSAALDVVSL EEEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHEEEEEEE NYQGEGIRDAAEFEGTQRIRKPPQYPAFHARFPHKAIVSSETASALSSRGVYLFPVTPDN ECCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCEEEEEECCCC SAPVRDGRGGDSAAHQVSAYELHAVDFGSSADKVFAALDRHPYVAGEFVWTGFDYLGEPT CCCCCCCCCCCHHHHEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECHHHCCCCC PYYSSRSSYSGIFDLAGFPKDRYWLYQSRWRPELPVAHLLPHWSWPGREGQVTPVHVFTS CCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEC GDEAELFVNGVSQGRKRKAPLQYRLRWDAVVYQPGELQMQAYKDGKPWASERVQTAGRAA CCCCEEEEECHHCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCHHE RMQLMPDRGSIRGDGQDLSFITVRLLDRDGRPAPTAGDRLRFRIEGPGELVATDNGDPTN EEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCC LETFASSQRHAFNGLCLAIVRAKAGARGTITVHVESDTLQAAQTQVAVQ HHHHHCCCCHHHCCEEEEEEECCCCCCCEEEEEEECCHHHHHHEEEECC >Mature Secondary Structure AAPHPASDASRERISLNAQWRFHRGDPPANQEILDYDVRPQVVRSDDGKVADAQPEQAQ CCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCHHH LTDASAVRVLKPWILPTANGLIADPAQRHTRPPGNPGSTVAYVQPHFDDSAWETVDLPHD CCCHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCC WAIAGPFLANGPYGGMGRLPSWGIGWYRKSLDIPASDRGRALFLDLDGAMSYATVWLNGT CEEECCEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEECE LVGGWPYGYSSWRVDLTPYVIAGKRNQLVIRLDNPPESARWYPGGGLYRNVWLTKTAPLH EEECCCCCCCCEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEE IAHWGTQLTTPHVSADAAQVQLTVTLDNAARSATQAQVSTAIYLLDDASDRPSGEAVARI EEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHEEEEEEEEEECCCCCCCCCEEEEC PAQPIAVPAGGTAHVQGSTRIDAPRLWGPPPTQQPHRYVAITEVGQQGHVVDRYETRFGI CCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHCC RSIVFDADRGLLVNGEHVPIRGVNNHHDLGALGAAFNRRAAERQLQLLQQMGANAIRMSH EEEEEECCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC NPPAPELLELTDRMGLLVVDEVFDSWEMKKTPLDFHLVFPQWHATDLRAMLRRDRNHPSV CCCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE MLWSVGNEVGEQYTGEQGAAIARALRAIVHAEDPTRPAAVAMNYASPEMPLSAALDVVSL EEEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHEEEEEEE NYQGEGIRDAAEFEGTQRIRKPPQYPAFHARFPHKAIVSSETASALSSRGVYLFPVTPDN ECCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCEEEEEECCCC SAPVRDGRGGDSAAHQVSAYELHAVDFGSSADKVFAALDRHPYVAGEFVWTGFDYLGEPT CCCCCCCCCCCHHHHEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECHHHCCCCC PYYSSRSSYSGIFDLAGFPKDRYWLYQSRWRPELPVAHLLPHWSWPGREGQVTPVHVFTS CCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEC GDEAELFVNGVSQGRKRKAPLQYRLRWDAVVYQPGELQMQAYKDGKPWASERVQTAGRAA CCCCEEEEECHHCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCHHE RMQLMPDRGSIRGDGQDLSFITVRLLDRDGRPAPTAGDRLRFRIEGPGELVATDNGDPTN EEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCC LETFASSQRHAFNGLCLAIVRAKAGARGTITVHVESDTLQAAQTQVAVQ HHHHHCCCCHHHCCEEEEEEECCCCCCCEEEEEEECCHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA