Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is 21242177
Identifier: 21242177
GI number: 21242177
Start: 1639855
End: 1640883
Strand: Reverse
Name: 21242177
Synonym: XAC1424
Alternate gene names: NA
Gene position: 1640883-1639855 (Counterclockwise)
Preceding gene: 77748585
Following gene: 21242176
Centisome position: 31.7
GC content: 65.69
Gene sequence:
>1029_bases ATGTCCACGTGTTGGCGCCTGATGCTCGCGCTGACGATCGCGATGTTGTGGCTTTGGCCCAGCGAGCGGGCGCACGCGGA CACCACCTGCACCGTCACCCTCGGCACGCCGTTGGCATTCGGCAACGTGGCGGCCAACGGCACCACCGATGCAGTGGCAA CACTCAATGTCTCCTGCGCGACGGCCGCGCTCAGCGTGCTGGGCTATGCACAAGTCAGCCTCTGCCTGGACCTTGGCCCC GGCAGTGCCAGCAGCGGCGTGTATGCCCCGCGCCGCATGCTCAACTCCACCAGCGACAGCCTGGATTTCCAGATCTACAG CGAGGCAACACGCACGCAGATCTGGGGCGCCACCGGGTCGGCCGCTCCCTCGCCGCGGACATTGACACTGTCCTACACCG TCCCGGTGATCACCGGCGGCTCGCAGACCACCACCATCACCGTGTATGGGCGGATTCCGGCCAACCAGATCCTTTCGGTC GGCAACCACACCAGCAGCTTTGGCGGCGCCGACACCGTGCTGCGCTACTCCTACAACGAAAGCATCACCGGGATGCCCTC GCTGCCGAGCAGTTGCACCGCTGGCGGCACCGGCTCCAAGACTGCCAGCAACGCCTTCCCGTTCACCGCCTCGGCCACTG TGCCGGCTCGCTGCAATGCCTACGTCACCACCGATCTGGACTTCGGCAGCATCGCCGGCAGCATCGACACCGCCATCGAT CGCTCCTCCACCATCAGCCTGGCCTGCACCAACCGCACCGCCTGGAATATCGGGCTGGACAATGGCAGCAATGCCAGCGG CAGCGTGCGGCGCATGCGTCACGCCAGCAGCGCCGATTACATCGACTACGAGCTCTACAGCAATACCGGGCGCAGCAATC GGTGGGGCACCGTCATCGGGGTGGACACGCTGTCCGGTACCGGCAATGGCACCACCCAGACCGTCACGGTGTATGGACGC GCGCCGGCCCCACAACTGCCGATTGCCGGCGCCTACACAGACACGGTGACCGTCTCCATCACTTACTGA
Upstream 100 bases:
>100_bases AGGGCCGTTGCGTTGCGCAGTTCGCGTATCCAGCCGACCCGGGCGGCATCCCGCGAGTGGGCCCGCTGCAGTGCATCCCT GAGCAGACCACGCCATGAGC
Downstream 100 bases:
>100_bases CAGTTAATAAAGTTCGTATCGGGGGCGTCGCTATTTCTTACGTCTCCAATGTAAACGATTGCCTCCATGACGCAGGTCAC CCTCCTGAAGCGACTGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Spore Coat U Domain Protein; Spore Coat Protein U; Signal Peptide Protein; Lipoprotein Signal Peptide; Spore Coat Protein U Domain-Containing; Spore Coat Protein U Domain Protein; Spore Coat Protein U Family Protein; Exported Lipoprotein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSTCWRLMLALTIAMLWLWPSERAHADTTCTVTLGTPLAFGNVAANGTTDAVATLNVSCATAALSVLGYAQVSLCLDLGP GSASSGVYAPRRMLNSTSDSLDFQIYSEATRTQIWGATGSAAPSPRTLTLSYTVPVITGGSQTTTITVYGRIPANQILSV GNHTSSFGGADTVLRYSYNESITGMPSLPSSCTAGGTGSKTASNAFPFTASATVPARCNAYVTTDLDFGSIAGSIDTAID RSSTISLACTNRTAWNIGLDNGSNASGSVRRMRHASSADYIDYELYSNTGRSNRWGTVIGVDTLSGTGNGTTQTVTVYGR APAPQLPIAGAYTDTVTVSITY
Sequences:
>Translated_342_residues MSTCWRLMLALTIAMLWLWPSERAHADTTCTVTLGTPLAFGNVAANGTTDAVATLNVSCATAALSVLGYAQVSLCLDLGP GSASSGVYAPRRMLNSTSDSLDFQIYSEATRTQIWGATGSAAPSPRTLTLSYTVPVITGGSQTTTITVYGRIPANQILSV GNHTSSFGGADTVLRYSYNESITGMPSLPSSCTAGGTGSKTASNAFPFTASATVPARCNAYVTTDLDFGSIAGSIDTAID RSSTISLACTNRTAWNIGLDNGSNASGSVRRMRHASSADYIDYELYSNTGRSNRWGTVIGVDTLSGTGNGTTQTVTVYGR APAPQLPIAGAYTDTVTVSITY >Mature_341_residues STCWRLMLALTIAMLWLWPSERAHADTTCTVTLGTPLAFGNVAANGTTDAVATLNVSCATAALSVLGYAQVSLCLDLGPG SASSGVYAPRRMLNSTSDSLDFQIYSEATRTQIWGATGSAAPSPRTLTLSYTVPVITGGSQTTTITVYGRIPANQILSVG NHTSSFGGADTVLRYSYNESITGMPSLPSSCTAGGTGSKTASNAFPFTASATVPARCNAYVTTDLDFGSIAGSIDTAIDR SSTISLACTNRTAWNIGLDNGSNASGSVRRMRHASSADYIDYELYSNTGRSNRWGTVIGVDTLSGTGNGTTQTVTVYGRA PAPQLPIAGAYTDTVTVSITY
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35499; Mature: 35368
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTCWRLMLALTIAMLWLWPSERAHADTTCTVTLGTPLAFGNVAANGTTDAVATLNVSCA CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEECCEECCCCCCEEEEEEEHHH TAALSVLGYAQVSLCLDLGPGSASSGVYAPRRMLNSTSDSLDFQIYSEATRTQIWGATGS HHHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCEEEECCCCC AAPSPRTLTLSYTVPVITGGSQTTTITVYGRIPANQILSVGNHTSSFGGADTVLRYSYNE CCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEEECCC SITGMPSLPSSCTAGGTGSKTASNAFPFTASATVPARCNAYVTTDLDFGSIAGSIDTAID CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHHHCCCHHHHCC RSSTISLACTNRTAWNIGLDNGSNASGSVRRMRHASSADYIDYELYSNTGRSNRWGTVIG CCCEEEEEEECCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEE VDTLSGTGNGTTQTVTVYGRAPAPQLPIAGAYTDTVTVSITY EEECCCCCCCCEEEEEEEECCCCCCCCCCCCEECEEEEEEEC >Mature Secondary Structure STCWRLMLALTIAMLWLWPSERAHADTTCTVTLGTPLAFGNVAANGTTDAVATLNVSCA CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEECCEECCCCCCEEEEEEEHHH TAALSVLGYAQVSLCLDLGPGSASSGVYAPRRMLNSTSDSLDFQIYSEATRTQIWGATGS HHHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCEEEECCCCC AAPSPRTLTLSYTVPVITGGSQTTTITVYGRIPANQILSVGNHTSSFGGADTVLRYSYNE CCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEEECCC SITGMPSLPSSCTAGGTGSKTASNAFPFTASATVPARCNAYVTTDLDFGSIAGSIDTAID CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHHHCCCHHHHCC RSSTISLACTNRTAWNIGLDNGSNASGSVRRMRHASSADYIDYELYSNTGRSNRWGTVIG CCCEEEEEEECCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEE VDTLSGTGNGTTQTVTVYGRAPAPQLPIAGAYTDTVTVSITY EEECCCCCCCCEEEEEEEECCCCCCCCCCCCEECEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA