Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is yebN [C]
Identifier: 21226745
GI number: 21226745
Start: 770329
End: 770889
Strand: Reverse
Name: yebN [C]
Synonym: MM_0643
Alternate gene names: 21226745
Gene position: 770889-770329 (Counterclockwise)
Preceding gene: 21226746
Following gene: 21226744
Centisome position: 18.82
GC content: 50.27
Gene sequence:
>561_bases ATGTCTTTTCTTACAAATTTCCTTTTAGGACTGGGGCTTGCAATGGACGCTTTTGCAGTTTCCATGTCAAGCGGCACCAC AGTCCGGCCCTTTAAGGTAAGTGATGCCCTCAAGCTGGCTGTCTTTTTCGGGGGCTTCCAGGCCCTGATGCCGGTACTGG GCTGGGTTGGGGGAAGTGCGGTAAGTGGCTTTGTTTCAGATTATGCCCCCTGGATTGCATTCGGGCTCCTGGCTTTCATC GGGGGCAAAATGATCTATGAAGCCCTCTACGGAGACCCGGACGGAAAAGTAAATTCCCTTAACTACTCCATGCTTTTCCT TTTAGCAGTCGCAACAAGCATAGACGCCCTTGCAGTGGGGATCAGCTTTGCTTTTCTGGGGACGCCCATTCTCGAGCCCG TAATTATCATAGGTTGTGTAACATTTGTCATGTCTTTTTGCGGGGCAGTTCTGGGGTACAGGATCGGCCACTTTTTCGAG AATGAGGTTGAAATCCTGGGCGGTTTGATCCTCATAGGGCTTGGAGTAAAAATCCTTGCCGAACATATGGACTGGATCTG A
Upstream 100 bases:
>100_bases TCCGCCCAGGACCGGTAAATGCAGCCAGAAAACCTTTAAGTGCCGGATAACCTATTATCCCGGGATCTCATGTATAAAAC GAAGTCGGAGTTACTTTTTC
Downstream 100 bases:
>100_bases AAATTACCTTAGAATCTTATAAAGTTACGCCAGATTCATATACCTCAAGCCATAGATGCAGTACCATGAGACTCGCGGTA ATCGAAGGTGACGGTATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFI GGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFE NEVEILGGLILIGLGVKILAEHMDWI
Sequences:
>Translated_186_residues MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFI GGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFE NEVEILGGLILIGLGVKILAEHMDWI >Mature_185_residues SFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFIG GKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFEN EVEILGGLILIGLGVKILAEHMDWI
Specific function: Unknown
COG id: COG1971
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0059 family [H]
Homologues:
Organism=Escherichia coli, GI87081981, Length=185, Percent_Identity=42.7027027027027, Blast_Score=139, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003810 - InterPro: IPR022929 [H]
Pfam domain/function: PF02659 DUF204 [H]
EC number: NA
Molecular weight: Translated: 19725; Mature: 19593
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSA CHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHH VSGFVSDYAPWIAFGLLAFIGGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFENEVEILGGLILIGLGVKILA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHMDWI HHHCCC >Mature Secondary Structure SFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSA HHHHHHHHHHHHHHHHHHHHCCCCCEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHH VSGFVSDYAPWIAFGLLAFIGGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFENEVEILGGLILIGLGVKILA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHMDWI HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]