Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is yebN [C]

Identifier: 21226745

GI number: 21226745

Start: 770329

End: 770889

Strand: Reverse

Name: yebN [C]

Synonym: MM_0643

Alternate gene names: 21226745

Gene position: 770889-770329 (Counterclockwise)

Preceding gene: 21226746

Following gene: 21226744

Centisome position: 18.82

GC content: 50.27

Gene sequence:

>561_bases
ATGTCTTTTCTTACAAATTTCCTTTTAGGACTGGGGCTTGCAATGGACGCTTTTGCAGTTTCCATGTCAAGCGGCACCAC
AGTCCGGCCCTTTAAGGTAAGTGATGCCCTCAAGCTGGCTGTCTTTTTCGGGGGCTTCCAGGCCCTGATGCCGGTACTGG
GCTGGGTTGGGGGAAGTGCGGTAAGTGGCTTTGTTTCAGATTATGCCCCCTGGATTGCATTCGGGCTCCTGGCTTTCATC
GGGGGCAAAATGATCTATGAAGCCCTCTACGGAGACCCGGACGGAAAAGTAAATTCCCTTAACTACTCCATGCTTTTCCT
TTTAGCAGTCGCAACAAGCATAGACGCCCTTGCAGTGGGGATCAGCTTTGCTTTTCTGGGGACGCCCATTCTCGAGCCCG
TAATTATCATAGGTTGTGTAACATTTGTCATGTCTTTTTGCGGGGCAGTTCTGGGGTACAGGATCGGCCACTTTTTCGAG
AATGAGGTTGAAATCCTGGGCGGTTTGATCCTCATAGGGCTTGGAGTAAAAATCCTTGCCGAACATATGGACTGGATCTG
A

Upstream 100 bases:

>100_bases
TCCGCCCAGGACCGGTAAATGCAGCCAGAAAACCTTTAAGTGCCGGATAACCTATTATCCCGGGATCTCATGTATAAAAC
GAAGTCGGAGTTACTTTTTC

Downstream 100 bases:

>100_bases
AAATTACCTTAGAATCTTATAAAGTTACGCCAGATTCATATACCTCAAGCCATAGATGCAGTACCATGAGACTCGCGGTA
ATCGAAGGTGACGGTATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFI
GGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFE
NEVEILGGLILIGLGVKILAEHMDWI

Sequences:

>Translated_186_residues
MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFI
GGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFE
NEVEILGGLILIGLGVKILAEHMDWI
>Mature_185_residues
SFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSAVSGFVSDYAPWIAFGLLAFIG
GKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVGISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFEN
EVEILGGLILIGLGVKILAEHMDWI

Specific function: Unknown

COG id: COG1971

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0059 family [H]

Homologues:

Organism=Escherichia coli, GI87081981, Length=185, Percent_Identity=42.7027027027027, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003810
- InterPro:   IPR022929 [H]

Pfam domain/function: PF02659 DUF204 [H]

EC number: NA

Molecular weight: Translated: 19725; Mature: 19593

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSA
CHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VSGFVSDYAPWIAFGLLAFIGGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFENEVEILGGLILIGLGVKILA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHMDWI
HHHCCC
>Mature Secondary Structure 
SFLTNFLLGLGLAMDAFAVSMSSGTTVRPFKVSDALKLAVFFGGFQALMPVLGWVGGSA
HHHHHHHHHHHHHHHHHHHHCCCCCEECCEEHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VSGFVSDYAPWIAFGLLAFIGGKMIYEALYGDPDGKVNSLNYSMLFLLAVATSIDALAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ISFAFLGTPILEPVIIIGCVTFVMSFCGAVLGYRIGHFFENEVEILGGLILIGLGVKILA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHMDWI
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]