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The map label for this gene is ydcM [C]

Identifier: 21226681

GI number: 21226681

Start: 706210

End: 707283

Strand: Reverse

Name: ydcM [C]

Synonym: MM_0579

Alternate gene names: 21226681

Gene position: 707283-706210 (Counterclockwise)

Preceding gene: 21226682

Following gene: 21226680

Centisome position: 17.27

GC content: 41.99

Gene sequence:

>1074_bases
ATGCCTGATCCACTTACGGTTTCTGGATCTTTTTCGCCAGAAGATGTCAAGCACATAGGATTGAAATCAATAATATCCGG
CCAGATCATCAAGAAATATTCCCAGAACCAGAACCTCAGATCCATAAAAAATGTGAAATTAATCATACCTTCGAAGGCTG
TATCTGTCGACAGGAATGAAAGAACCCTTTTTATTCCCTGCTTGAAACTCCTGTTAAACTATCGTTTTTCTAACAACTTT
AACAAAGTCTCCCAGATAGAAATTGACAATGTCTATGCTTATGTAGCAGTGGTATTTCCAGATGAAGAACCAGAAAGTTT
CGGGTACTATATAGGAGTCGATCGAAATACCATGGGGCATATAGCAGTTGTAGCAGACCCTGATTCAGGTAAAGTCTGGA
AGCTGGGAAAAATGCGTTACCATATACATCAAAAATACCAGAACATAATGAACCGTCTCAGTAATAGCGGTAAAAATAAA
CAACTAAAAGCTGTCAAAAAACGCGAAAAGAACATTGTAAAGGATTTGAACCATAAAATAAGCCGGAAGATTGTGGACCT
GGCTCTATATAATGGAAGTGGAATTAAACTTGAAAACCTGAAAGGAATTCGGAAACTCAATAGCAAATCCAATGGTGCAG
GAAAAGGTAAGCCTGATCAAAACAAAGACAAAAAACTTACTTGTTCAAATGAATATTCCCTGAACAACTGGTCTTTTCTC
CAGCTCCAGCAGTTTATTGAATATAAGGCCAGGTTGCGGGGGGTAGAGGTAGTCTATATTGATCCCTATGCGACGAGCAA
GAAGTGCAGCCGCTGCGGACATACAGGCAACCGACAGAGCAAGCGGTTTGAGTGCCCCTGCTGCGGGCACGTTGACCATG
CCGATGTCAACGCTGCCTTTAATATAGCGTTGACGCCAAAAGATACTGGTCAATTCTCTGCAGAAAGAGATGCAGGGAAA
GGGCGCACTGATACCCCTCAAAAAGTCCTGGCTCGTAACGCCTTCAGTAAGCGTGCAGCCAGGGAAAAAGCTTCTCCGCA
GTTTGCATGGGAAGTATGTCAGTTTTTAACTTAA

Upstream 100 bases:

>100_bases
TCTTTCATCTCCGCTATCATCCTCGTTTTCTACTTCTTCTGAGTCTTTTCGTGAATTCTCAACTATTCTCTCTGTTCCTA
AGTTTCTTGATTCTTTATCC

Downstream 100 bases:

>100_bases
GATCGCCTCCTGCAAATTGAAGCCTGTGAGCTTCTTGAGCCTTTAAGTTTTTAGTTCGAAGAAATCAGCGTCTACTAATC
AGGTTCGAAAAATTCCTCTT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MPDPLTVSGSFSPEDVKHIGLKSIISGQIIKKYSQNQNLRSIKNVKLIIPSKAVSVDRNERTLFIPCLKLLLNYRFSNNF
NKVSQIEIDNVYAYVAVVFPDEEPESFGYYIGVDRNTMGHIAVVADPDSGKVWKLGKMRYHIHQKYQNIMNRLSNSGKNK
QLKAVKKREKNIVKDLNHKISRKIVDLALYNGSGIKLENLKGIRKLNSKSNGAGKGKPDQNKDKKLTCSNEYSLNNWSFL
QLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAFNIALTPKDTGQFSAERDAGK
GRTDTPQKVLARNAFSKRAAREKASPQFAWEVCQFLT

Sequences:

>Translated_357_residues
MPDPLTVSGSFSPEDVKHIGLKSIISGQIIKKYSQNQNLRSIKNVKLIIPSKAVSVDRNERTLFIPCLKLLLNYRFSNNF
NKVSQIEIDNVYAYVAVVFPDEEPESFGYYIGVDRNTMGHIAVVADPDSGKVWKLGKMRYHIHQKYQNIMNRLSNSGKNK
QLKAVKKREKNIVKDLNHKISRKIVDLALYNGSGIKLENLKGIRKLNSKSNGAGKGKPDQNKDKKLTCSNEYSLNNWSFL
QLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAFNIALTPKDTGQFSAERDAGK
GRTDTPQKVLARNAFSKRAAREKASPQFAWEVCQFLT
>Mature_356_residues
PDPLTVSGSFSPEDVKHIGLKSIISGQIIKKYSQNQNLRSIKNVKLIIPSKAVSVDRNERTLFIPCLKLLLNYRFSNNFN
KVSQIEIDNVYAYVAVVFPDEEPESFGYYIGVDRNTMGHIAVVADPDSGKVWKLGKMRYHIHQKYQNIMNRLSNSGKNKQ
LKAVKKREKNIVKDLNHKISRKIVDLALYNGSGIKLENLKGIRKLNSKSNGAGKGKPDQNKDKKLTCSNEYSLNNWSFLQ
LQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAFNIALTPKDTGQFSAERDAGKG
RTDTPQKVLARNAFSKRAAREKASPQFAWEVCQFLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=135, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 40363; Mature: 40232

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPLTVSGSFSPEDVKHIGLKSIISGQIIKKYSQNQNLRSIKNVKLIIPSKAVSVDRNE
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCEEECCCCC
RTLFIPCLKLLLNYRFSNNFNKVSQIEIDNVYAYVAVVFPDEEPESFGYYIGVDRNTMGH
CEEEHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCEEEEECCCCCCE
IAVVADPDSGKVWKLGKMRYHIHQKYQNIMNRLSNSGKNKQLKAVKKREKNIVKDLNHKI
EEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
SRKIVDLALYNGSGIKLENLKGIRKLNSKSNGAGKGKPDQNKDKKLTCSNEYSLNNWSFL
HHHEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
QLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAF
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEE
NIALTPKDTGQFSAERDAGKGRTDTPQKVLARNAFSKRAAREKASPQFAWEVCQFLT
EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
PDPLTVSGSFSPEDVKHIGLKSIISGQIIKKYSQNQNLRSIKNVKLIIPSKAVSVDRNE
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCEEECCCCC
RTLFIPCLKLLLNYRFSNNFNKVSQIEIDNVYAYVAVVFPDEEPESFGYYIGVDRNTMGH
CEEEHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCEEEEECCCCCCE
IAVVADPDSGKVWKLGKMRYHIHQKYQNIMNRLSNSGKNKQLKAVKKREKNIVKDLNHKI
EEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
SRKIVDLALYNGSGIKLENLKGIRKLNSKSNGAGKGKPDQNKDKKLTCSNEYSLNNWSFL
HHHEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
QLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKRFECPCCGHVDHADVNAAF
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEE
NIALTPKDTGQFSAERDAGKGRTDTPQKVLARNAFSKRAAREKASPQFAWEVCQFLT
EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]