Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226667
Identifier: 21226667
GI number: 21226667
Start: 691202
End: 691804
Strand: Direct
Name: 21226667
Synonym: MM_0565
Alternate gene names: NA
Gene position: 691202-691804 (Clockwise)
Preceding gene: 21226657
Following gene: 21226669
Centisome position: 16.87
GC content: 42.95
Gene sequence:
>603_bases ATGTCAAAGCTTACACTCATCTCCACCATCTATTCCCTTGAACCTGTTATTATCTGTGTGACGCGCCTCTCTCCTTCAAA AATTATACTTCTCTCAGAAGAAGGGGCAAATGATAAGAAAGTGCAATCTGAAGATATAATTGAAAAAACCTTCAAAAACG CGCTTGAAGTTGAGAAAAAATATACTGCTCTTTATGACACCGTCCGCGTAGCAAAAGACGTTGCTGAACTGATTGAAAAG GAACACGATAGAGGCAACCAGGTCATTGTAAATGTATCTGGAGGCAGAAAGCCGCAGGCTTTTGGGGCGCTTTTCGGGGC ATATGCAAGAAATGATATGGTTCAGAGAGTTGTTTACGTCACCGAAGAAGACAGCATGATGATTGATTTTCCGGTCCTGA GCTTCAACCTATCGGAAACCAAGAAACTGATACTCGAAGAGATCCAGAAAGGGAACTCATCTGTCACCAAAATTGCAGCG ACCGCCGGGATTTCTAAAGGGATGACTTACAACCATCTCAGGGAACTCAAATCGATGGGATATATCGCAGACGGGGACAG CGGATACATAATAACTGATGCAGGAAGAATTGCTTCCATTTAA
Upstream 100 bases:
>100_bases TTTCTAAAAATAATTATAAAAATAAGCAAATAGAACCAAACATCAACTAAATCCCTATATCGTAAAACATTTAACCAAAC CCTACAATACATGACATCTA
Downstream 100 bases:
>100_bases CTGCCTGAAGAGTAGAGAAATTAACCGAAAAGCTTGAGGAGCTTAAGACAGAGCTATCGCCTTTACCTTCTTTCTTACCT TCCTTCTTTCTTACCTTCCT
Product: transcriptional regulator
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSKLTLISTIYSLEPVIICVTRLSPSKIILLSEEGANDKKVQSEDIIEKTFKNALEVEKKYTALYDTVRVAKDVAELIEK EHDRGNQVIVNVSGGRKPQAFGALFGAYARNDMVQRVVYVTEEDSMMIDFPVLSFNLSETKKLILEEIQKGNSSVTKIAA TAGISKGMTYNHLRELKSMGYIADGDSGYIITDAGRIASI
Sequences:
>Translated_200_residues MSKLTLISTIYSLEPVIICVTRLSPSKIILLSEEGANDKKVQSEDIIEKTFKNALEVEKKYTALYDTVRVAKDVAELIEK EHDRGNQVIVNVSGGRKPQAFGALFGAYARNDMVQRVVYVTEEDSMMIDFPVLSFNLSETKKLILEEIQKGNSSVTKIAA TAGISKGMTYNHLRELKSMGYIADGDSGYIITDAGRIASI >Mature_199_residues SKLTLISTIYSLEPVIICVTRLSPSKIILLSEEGANDKKVQSEDIIEKTFKNALEVEKKYTALYDTVRVAKDVAELIEKE HDRGNQVIVNVSGGRKPQAFGALFGAYARNDMVQRVVYVTEEDSMMIDFPVLSFNLSETKKLILEEIQKGNSSVTKIAAT AGISKGMTYNHLRELKSMGYIADGDSGYIITDAGRIASI
Specific function: Unknown
COG id: COG0640
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22088; Mature: 21956
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLTLISTIYSLEPVIICVTRLSPSKIILLSEEGANDKKVQSEDIIEKTFKNALEVEKK CCCHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH YTALYDTVRVAKDVAELIEKEHDRGNQVIVNVSGGRKPQAFGALFGAYARNDMVQRVVYV HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEE TEEDSMMIDFPVLSFNLSETKKLILEEIQKGNSSVTKIAATAGISKGMTYNHLRELKSMG ECCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC YIADGDSGYIITDAGRIASI CEEECCCCEEEECCCCCCCC >Mature Secondary Structure SKLTLISTIYSLEPVIICVTRLSPSKIILLSEEGANDKKVQSEDIIEKTFKNALEVEKK CCHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH YTALYDTVRVAKDVAELIEKEHDRGNQVIVNVSGGRKPQAFGALFGAYARNDMVQRVVYV HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEE TEEDSMMIDFPVLSFNLSETKKLILEEIQKGNSSVTKIAATAGISKGMTYNHLRELKSMG ECCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCC YIADGDSGYIITDAGRIASI CEEECCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA