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The map label for this gene is aubA [H]

Identifier: 212224559

GI number: 212224559

Start: 1284009

End: 1285424

Strand: Reverse

Name: aubA [H]

Synonym: TON_1408

Alternate gene names: 212224559

Gene position: 1285424-1284009 (Counterclockwise)

Preceding gene: 212224560

Following gene: 212224556

Centisome position: 69.57

GC content: 53.67

Gene sequence:

>1416_bases
GTGTCTACAGACACAGGAGTTTCAGTTCGGGTTAGGGGCATCTACAGCACGGCCCTCACGAAGCTCTTCCTCGACAGGGG
CTTTGGCATCTCCCAGCCGAGCCAGAAGATCGTCGAGCGCTTCAACCTCGAAAAGACCTACGACGAGTTTGACGTTGATG
TTTACGACAAGAAGAACCATCACGGTGTCGTTCTCGTTGGGACGAGGGTTGAGGAGGTTAGGAAGGTCCTTGAGGACGAG
CTGATAGATGTTTTCTTTAGAAAGCTTCCCTACCAGCTCTATGGGATATACAAGGGAATGATCGTCAAGAGAGACGAGCG
TTACGTTTACATCGACATAGGCAGTGCCATAGGCACAGTCGTTGCCGACGAGCTTCCAAACGCTATGGAAGGCGACGAAG
TCCTCGTCCAGGTCAAGAAGCACAACCTCCTGCCGCATCTGAGCGTTACTTTGACCATTCCCGGTGACTACGCGGTGCTC
ATTCCAAAGCCGATAGGGGCGCAGAGGCACGTGAAGATATCCAGAAAGATACGCGACCAGAGCGAGAGGGAGAGGCTTAG
GATCCTCGGACTCAGCATAGACCTCGGGGAGTGGGGAATACTCTGGAGGACTGCCGCAGCCTATAAGGACTGGAACACCC
TCAGGGATGAGATAATAAAGCTTTCCAAGCTCGCCGACAAGCTCAAGAAGGCGGACTCCTACACGGCTCCATCTGTCATA
ATTGAGGGCAGGAACATCTACGAGGTCGAGTTCGGTGGAGGGGCAAAGAAGAAGCTCGACGAGATAAGAAACAAGGTTGT
TCCCACCGTTGAGGGTCACCACCAGCTGAAAGCCTATGACCCAGAGCTCAGTTTTGCGGTTGAAATAGCCGAGGGAATCC
TCGCCAAGGTTCCGGGCCAGAGGGGAAAGGTGAGGCAGGGCTTCTGGGAGGCTTTGATTAGTAACAGGGGGCCGAAGAAG
GGCTGGCTTTTCAGCCTGGAGCACTACAAGCCCGACGGCCAGAGGATAAAGATAGGGCCGGGCGAGATAGTTGAGGTCTC
CATGAACCCGCTCAAGGTTACCATAAAGCGCCACCTCAAGCCCGGCAAGTTCTACGACGGCCTTGACATTCCGATAGAGT
TCGGCGACTATGTGATTACTGAGATAGAGGCAGGTAAATGGTGGTTCGTCCACAGGTATTACGACAGAGACGGCAACCTA
AAGGGCGAGTACTACAACATCAACACTCCCGTCGAGATTTACCCTGACAGGGCGCGCTACGTTGACCTTGAGGTCGACAT
CGTCAAGTGGCCGGACGGCAAGAAGGAGATAATCGACAAGGACAAGCTCACCGAGCACTACGAAGAGGGCATCATCACAG
AGAAGCTCTACAAAGCCGTGCTCAGGATAACCCAGGAAGTGTTTGAGAGGGTTTGA

Upstream 100 bases:

>100_bases
AGGAACGTGGAGAAGCTCAGCGGCGTTGGGAGAGCCGGCGAGATACTCGAAGGTCTGACGCTCATAGGAGTGGTGGAAAA
GAAAATGAGGGGTGGTGAAA

Downstream 100 bases:

>100_bases
ACCTTTTCTTTTCTCTTGCTCGGCCAGAATATTATTGATTGTACTCAGCAGGCAATACTCGCAAAACTCGACTATTCTTC
TCTCCCAAGCACGTCCTCTA

Product: RNA-binding protein FAU-1

Products: NA

Alternate protein names: AU-binding protein [H]

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSTDTGVSVRVRGIYSTALTKLFLDRGFGISQPSQKIVERFNLEKTYDEFDVDVYDKKNHHGVVLVGTRVEEVRKVLEDE
LIDVFFRKLPYQLYGIYKGMIVKRDERYVYIDIGSAIGTVVADELPNAMEGDEVLVQVKKHNLLPHLSVTLTIPGDYAVL
IPKPIGAQRHVKISRKIRDQSERERLRILGLSIDLGEWGILWRTAAAYKDWNTLRDEIIKLSKLADKLKKADSYTAPSVI
IEGRNIYEVEFGGGAKKKLDEIRNKVVPTVEGHHQLKAYDPELSFAVEIAEGILAKVPGQRGKVRQGFWEALISNRGPKK
GWLFSLEHYKPDGQRIKIGPGEIVEVSMNPLKVTIKRHLKPGKFYDGLDIPIEFGDYVITEIEAGKWWFVHRYYDRDGNL
KGEYYNINTPVEIYPDRARYVDLEVDIVKWPDGKKEIIDKDKLTEHYEEGIITEKLYKAVLRITQEVFERV

Sequences:

>Translated_471_residues
MSTDTGVSVRVRGIYSTALTKLFLDRGFGISQPSQKIVERFNLEKTYDEFDVDVYDKKNHHGVVLVGTRVEEVRKVLEDE
LIDVFFRKLPYQLYGIYKGMIVKRDERYVYIDIGSAIGTVVADELPNAMEGDEVLVQVKKHNLLPHLSVTLTIPGDYAVL
IPKPIGAQRHVKISRKIRDQSERERLRILGLSIDLGEWGILWRTAAAYKDWNTLRDEIIKLSKLADKLKKADSYTAPSVI
IEGRNIYEVEFGGGAKKKLDEIRNKVVPTVEGHHQLKAYDPELSFAVEIAEGILAKVPGQRGKVRQGFWEALISNRGPKK
GWLFSLEHYKPDGQRIKIGPGEIVEVSMNPLKVTIKRHLKPGKFYDGLDIPIEFGDYVITEIEAGKWWFVHRYYDRDGNL
KGEYYNINTPVEIYPDRARYVDLEVDIVKWPDGKKEIIDKDKLTEHYEEGIITEKLYKAVLRITQEVFERV
>Mature_470_residues
STDTGVSVRVRGIYSTALTKLFLDRGFGISQPSQKIVERFNLEKTYDEFDVDVYDKKNHHGVVLVGTRVEEVRKVLEDEL
IDVFFRKLPYQLYGIYKGMIVKRDERYVYIDIGSAIGTVVADELPNAMEGDEVLVQVKKHNLLPHLSVTLTIPGDYAVLI
PKPIGAQRHVKISRKIRDQSERERLRILGLSIDLGEWGILWRTAAAYKDWNTLRDEIIKLSKLADKLKKADSYTAPSVII
EGRNIYEVEFGGGAKKKLDEIRNKVVPTVEGHHQLKAYDPELSFAVEIAEGILAKVPGQRGKVRQGFWEALISNRGPKKG
WLFSLEHYKPDGQRIKIGPGEIVEVSMNPLKVTIKRHLKPGKFYDGLDIPIEFGDYVITEIEAGKWWFVHRYYDRDGNLK
GEYYNINTPVEIYPDRARYVDLEVDIVKWPDGKKEIIDKDKLTEHYEEGIITEKLYKAVLRITQEVFERV

Specific function: Binds to RNA in loop regions with AU-rich sequences [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007295
- InterPro:   IPR019307
- InterPro:   IPR016730
- InterPro:   IPR022967 [H]

Pfam domain/function: PF04167 DUF402; PF10150 RNase_E_G [H]

EC number: NA

Molecular weight: Translated: 54131; Mature: 54000

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDTGVSVRVRGIYSTALTKLFLDRGFGISQPSQKIVERFNLEKTYDEFDVDVYDKKNH
CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCC
HGVVLVGTRVEEVRKVLEDELIDVFFRKLPYQLYGIYKGMIVKRDERYVYIDIGSAIGTV
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEEECCCEEEEEECCHHHHH
VADELPNAMEGDEVLVQVKKHNLLPHLSVTLTIPGDYAVLIPKPIGAQRHVKISRKIRDQ
HHHHCCCCCCCCCEEEEEHHCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEHHHHHCCH
SERERLRILGLSIDLGEWGILWRTAAAYKDWNTLRDEIIKLSKLADKLKKADSYTAPSVI
HHHCEEEEEEEEEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IEGRNIYEVEFGGGAKKKLDEIRNKVVPTVEGHHQLKAYDPELSFAVEIAEGILAKVPGQ
EECCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
RGKVRQGFWEALISNRGPKKGWLFSLEHYKPDGQRIKIGPGEIVEVSMNPLKVTIKRHLK
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEECCCEEEEEECCCC
PGKFYDGLDIPIEFGDYVITEIEAGKWWFVHRYYDRDGNLKGEYYNINTPVEIYPDRARY
CCCCCCCCCCEEECCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCEEECCCCCEE
VDLEVDIVKWPDGKKEIIDKDKLTEHYEEGIITEKLYKAVLRITQEVFERV
EEEEEEEEECCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STDTGVSVRVRGIYSTALTKLFLDRGFGISQPSQKIVERFNLEKTYDEFDVDVYDKKNH
CCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCC
HGVVLVGTRVEEVRKVLEDELIDVFFRKLPYQLYGIYKGMIVKRDERYVYIDIGSAIGTV
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCEEEEECCCEEEEEECCHHHHH
VADELPNAMEGDEVLVQVKKHNLLPHLSVTLTIPGDYAVLIPKPIGAQRHVKISRKIRDQ
HHHHCCCCCCCCCEEEEEHHCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEHHHHHCCH
SERERLRILGLSIDLGEWGILWRTAAAYKDWNTLRDEIIKLSKLADKLKKADSYTAPSVI
HHHCEEEEEEEEEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IEGRNIYEVEFGGGAKKKLDEIRNKVVPTVEGHHQLKAYDPELSFAVEIAEGILAKVPGQ
EECCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
RGKVRQGFWEALISNRGPKKGWLFSLEHYKPDGQRIKIGPGEIVEVSMNPLKVTIKRHLK
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEECCCEEEEEECCCC
PGKFYDGLDIPIEFGDYVITEIEAGKWWFVHRYYDRDGNLKGEYYNINTPVEIYPDRARY
CCCCCCCCCCEEECCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCEEECCCCCEE
VDLEVDIVKWPDGKKEIIDKDKLTEHYEEGIITEKLYKAVLRITQEVFERV
EEEEEEEEECCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA