Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695968
Identifier: 209695968
GI number: 209695968
Start: 2731097
End: 2731627
Strand: Reverse
Name: 209695968
Synonym: VSAL_I2550
Alternate gene names: NA
Gene position: 2731627-2731097 (Counterclockwise)
Preceding gene: 209695969
Following gene: 209695966
Centisome position: 82.15
GC content: 34.84
Gene sequence:
>531_bases ATGCTTATAGATAGTATTTATAAAGATCATGGTTACATTAACCGAATTATTCAGTTGTTGGATAAAAAACTGAATCGGTT AGAGGAAGAAAAGACAGTCAATTATAATGTAATACGTGAAAGCGTTGATTATCTATCGTCTTTTGCTGAAAAAAATCATC ATCCAAAAGAAGATAGGATCTATCAATATTTTATTGATAAGTATGGCGAGAATAAAGCACTGACCAATTTATTGCATGAA CACAATACGCTTTCTGCAGATACTGTTGATTTTTCAATAACACTTGAAATGATTTTACAGGATGCGATTGTCCCGAAAGA TATTTTTAGAGAGCACTTACTTGCATTTACGAAACGCATTCGCCGACATCTTGAACTAGAAGAAAAAGAGGTATTTCCTT TTTTAAAGGCGCAGTTAACTGAGATTGATTGGCGTAATTTAGAAAAGGGATGGGTGGAGGAAGACGATCCTGTGTTTGGT GAAAGAGTGCATAGACGCTATGTTCAATTAGCGGAACAGGTAAGAGCTTAG
Upstream 100 bases:
>100_bases ACATTGGACTAGTGGTTAAAAGTTGAACTGAAAAGCGGTGCTCCTTTAATAATACGTTAGACTCAAAAGGTAATCACCTG ACAGAGTAAGGGAGGACAGG
Downstream 100 bases:
>100_bases ATTGATAAAAAGGAGAGCGTTAGTGCTCTCCTTTTTTATTGGCTATTTTAAAATACAATCGTCAATACTGCCGCTAAAAA AGGGATCAAGCTCTTGCAGT
Product: hemerythrin
Products: NA
Alternate protein names: Hemerythrin Family Protein
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MLIDSIYKDHGYINRIIQLLDKKLNRLEEEKTVNYNVIRESVDYLSSFAEKNHHPKEDRIYQYFIDKYGENKALTNLLHE HNTLSADTVDFSITLEMILQDAIVPKDIFREHLLAFTKRIRRHLELEEKEVFPFLKAQLTEIDWRNLEKGWVEEDDPVFG ERVHRRYVQLAEQVRA
Sequences:
>Translated_176_residues MLIDSIYKDHGYINRIIQLLDKKLNRLEEEKTVNYNVIRESVDYLSSFAEKNHHPKEDRIYQYFIDKYGENKALTNLLHE HNTLSADTVDFSITLEMILQDAIVPKDIFREHLLAFTKRIRRHLELEEKEVFPFLKAQLTEIDWRNLEKGWVEEDDPVFG ERVHRRYVQLAEQVRA >Mature_176_residues MLIDSIYKDHGYINRIIQLLDKKLNRLEEEKTVNYNVIRESVDYLSSFAEKNHHPKEDRIYQYFIDKYGENKALTNLLHE HNTLSADTVDFSITLEMILQDAIVPKDIFREHLLAFTKRIRRHLELEEKEVFPFLKAQLTEIDWRNLEKGWVEEDDPVFG ERVHRRYVQLAEQVRA
Specific function: Unknown
COG id: COG3945
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21157; Mature: 21157
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIDSIYKDHGYINRIIQLLDKKLNRLEEEKTVNYNVIRESVDYLSSFAEKNHHPKEDRI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH YQYFIDKYGENKALTNLLHEHNTLSADTVDFSITLEMILQDAIVPKDIFREHLLAFTKRI HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RRHLELEEKEVFPFLKAQLTEIDWRNLEKGWVEEDDPVFGERVHRRYVQLAEQVRA HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLIDSIYKDHGYINRIIQLLDKKLNRLEEEKTVNYNVIRESVDYLSSFAEKNHHPKEDRI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH YQYFIDKYGENKALTNLLHEHNTLSADTVDFSITLEMILQDAIVPKDIFREHLLAFTKRI HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RRHLELEEKEVFPFLKAQLTEIDWRNLEKGWVEEDDPVFGERVHRRYVQLAEQVRA HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA