Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695475

Identifier: 209695475

GI number: 209695475

Start: 2169395

End: 2170516

Strand: Direct

Name: 209695475

Synonym: VSAL_I2025

Alternate gene names: NA

Gene position: 2169395-2170516 (Clockwise)

Preceding gene: 209695474

Following gene: 209695476

Centisome position: 65.24

GC content: 39.22

Gene sequence:

>1122_bases
ATGGCGATGAATAAAGAGAAAAAAACCAGCCTAAAGGTGTCACTGTTTATTCTTATCGTTGTATTTTCTTTTTCTGCTGC
TTATTACATAAATTGGCATGAAGTGGATGAAGGAGGTAAGAATGAAATTAATACGATTTTTGCCGAGTCAAATAATGCGT
ATTTTAACCCTGTTTTGCCTGGGTATCCTTTAGCTTTCCCAAAAGATTACCGAGAGCACCCTAATTTTCAGCATGAACAA
TGGATGATGACAGTCAATGGTATTAGCAGCACGGGTGATACCATCGGAATTCAATGGACGATTTTTCGTATATCAAGCGA
TGATAGAGAGACGAAAGGCTGGTTAGATCCTAAACTGTATATCGCTAAAGTCGTAGTGACGACTGAAGATGGTAAATGGG
TAGGAGAGAGAGTCGCAAGAGGTGGAATAGGGCAAGCAGGCATCAGTCAGCGGCCTTATCGAGTGTGGATTGATGATTGG
CAGTGGCGAAGCTTAGGTCGAACGCCATTTCCCGCTGTTGTCACTGCGGGCGCTAAAGATTTTTCAATTAAATTATCGAT
TAATCAGGAAGGACCTGTTATTCCGCTTGGCGAACAAGGGTATTCTAAAAAACACGATTTAATGCCGATTGCGTCTTATG
AATATATGGCCCCATTTCTTGCGGTGCGAGGTAATGTAACGCTTGATAATAAAGTCTATTCATTTGTTGGAAAAGGCATA
CTTGAGCATGAATGGGGAAGTGGTTTATTGGATGAAAACCAACAAGGTTGGGATTGGTTTATTATTAATTTAAATAAAGA
CAGTAAGTTACTGGTTATTCAATACCGTCATCAAGGCCAAGAACCTTACCGTTATGGTTCGTTATTATACAAAAATGGTA
GCCATGTTCCTTTAACGTCTAATGAGATTAGCTTCCAAACGTTACCTGCAAGACAATTGAAGGATGGACGTAAGTTACCT
TTACAATGGATAATTAATATTCCTAAATACGATATAAATTTAACGACTCAAGTAGTCAGGGATGAACAATGGTTAAATAC
GTTAATACCTTATTGGCAAGGACCGATTACGACATCCGGTTCTCACGAAGTGACCGGATTTATGCAATTAACCGGTTATT
AA

Upstream 100 bases:

>100_bases
CTTTTGGATGGGCTTTGCTTGCTCTAACGGTTGCAGGTTCGGCAACGGTATGGCGAGTGACTAGACGACAAGCGATTACG
TCTTTAAGAGAGTCTTTATA

Downstream 100 bases:

>100_bases
TTGAATAAATAATACGGCTAATACTTTGTATAAGCGTGAATACTTCGGTTTTTCCGATGTTTATGCTCTGAACAAGCGAT
TATTATTGATATTAAGCAAC

Product: membrane protein

Products: NA

Alternate protein names: Secreted Hydrolase-Like Protein; Lipoprotein; Hydrolase; ABC Transporter Type C Secreted Protein; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MAMNKEKKTSLKVSLFILIVVFSFSAAYYINWHEVDEGGKNEINTIFAESNNAYFNPVLPGYPLAFPKDYREHPNFQHEQ
WMMTVNGISSTGDTIGIQWTIFRISSDDRETKGWLDPKLYIAKVVVTTEDGKWVGERVARGGIGQAGISQRPYRVWIDDW
QWRSLGRTPFPAVVTAGAKDFSIKLSINQEGPVIPLGEQGYSKKHDLMPIASYEYMAPFLAVRGNVTLDNKVYSFVGKGI
LEHEWGSGLLDENQQGWDWFIINLNKDSKLLVIQYRHQGQEPYRYGSLLYKNGSHVPLTSNEISFQTLPARQLKDGRKLP
LQWIINIPKYDINLTTQVVRDEQWLNTLIPYWQGPITTSGSHEVTGFMQLTGY

Sequences:

>Translated_373_residues
MAMNKEKKTSLKVSLFILIVVFSFSAAYYINWHEVDEGGKNEINTIFAESNNAYFNPVLPGYPLAFPKDYREHPNFQHEQ
WMMTVNGISSTGDTIGIQWTIFRISSDDRETKGWLDPKLYIAKVVVTTEDGKWVGERVARGGIGQAGISQRPYRVWIDDW
QWRSLGRTPFPAVVTAGAKDFSIKLSINQEGPVIPLGEQGYSKKHDLMPIASYEYMAPFLAVRGNVTLDNKVYSFVGKGI
LEHEWGSGLLDENQQGWDWFIINLNKDSKLLVIQYRHQGQEPYRYGSLLYKNGSHVPLTSNEISFQTLPARQLKDGRKLP
LQWIINIPKYDINLTTQVVRDEQWLNTLIPYWQGPITTSGSHEVTGFMQLTGY
>Mature_372_residues
AMNKEKKTSLKVSLFILIVVFSFSAAYYINWHEVDEGGKNEINTIFAESNNAYFNPVLPGYPLAFPKDYREHPNFQHEQW
MMTVNGISSTGDTIGIQWTIFRISSDDRETKGWLDPKLYIAKVVVTTEDGKWVGERVARGGIGQAGISQRPYRVWIDDWQ
WRSLGRTPFPAVVTAGAKDFSIKLSINQEGPVIPLGEQGYSKKHDLMPIASYEYMAPFLAVRGNVTLDNKVYSFVGKGIL
EHEWGSGLLDENQQGWDWFIINLNKDSKLLVIQYRHQGQEPYRYGSLLYKNGSHVPLTSNEISFQTLPARQLKDGRKLPL
QWIINIPKYDINLTTQVVRDEQWLNTLIPYWQGPITTSGSHEVTGFMQLTGY

Specific function: Unknown

COG id: COG5621

COG function: function code R; Predicted secreted hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42621; Mature: 42490

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS01109 RIBOSOMAL_L10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNKEKKTSLKVSLFILIVVFSFSAAYYINWHEVDEGGKNEINTIFAESNNAYFNPVLP
CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEEEECCCCEECCCCC
GYPLAFPKDYREHPNFQHEQWMMTVNGISSTGDTIGIQWTIFRISSDDRETKGWLDPKLY
CCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEE
IAKVVVTTEDGKWVGERVARGGIGQAGISQRPYRVWIDDWQWRSLGRTPFPAVVTAGAKD
EEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEEEECEEECCCCCCCCCCEEECCCCC
FSIKLSINQEGPVIPLGEQGYSKKHDLMPIASYEYMAPFLAVRGNVTLDNKVYSFVGKGI
EEEEEEECCCCCEEECCCCCCCCCCCCCEECCHHHHCCEEEECCCEEECHHHHHHHCCCC
LEHEWGSGLLDENQQGWDWFIINLNKDSKLLVIQYRHQGQEPYRYGSLLYKNGSHVPLTS
EECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEECEEEEECCCCCCCCC
NEISFQTLPARQLKDGRKLPLQWIINIPKYDINLTTQVVRDEQWLNTLIPYWQGPITTSG
CCCEEEECCHHHHCCCCCCCEEEEEECCCCCCEEEHEEHHHHHHHHHHHHHCCCCCCCCC
SHEVTGFMQLTGY
CCCEEEEEEEECC
>Mature Secondary Structure 
AMNKEKKTSLKVSLFILIVVFSFSAAYYINWHEVDEGGKNEINTIFAESNNAYFNPVLP
CCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEEEECCCCEECCCCC
GYPLAFPKDYREHPNFQHEQWMMTVNGISSTGDTIGIQWTIFRISSDDRETKGWLDPKLY
CCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEE
IAKVVVTTEDGKWVGERVARGGIGQAGISQRPYRVWIDDWQWRSLGRTPFPAVVTAGAKD
EEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEEEECEEECCCCCCCCCCEEECCCCC
FSIKLSINQEGPVIPLGEQGYSKKHDLMPIASYEYMAPFLAVRGNVTLDNKVYSFVGKGI
EEEEEEECCCCCEEECCCCCCCCCCCCCEECCHHHHCCEEEECCCEEECHHHHHHHCCCC
LEHEWGSGLLDENQQGWDWFIINLNKDSKLLVIQYRHQGQEPYRYGSLLYKNGSHVPLTS
EECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEECEEEEECCCCCCCCC
NEISFQTLPARQLKDGRKLPLQWIINIPKYDINLTTQVVRDEQWLNTLIPYWQGPITTSG
CCCEEEECCHHHHCCCCCCCEEEEEECCCCCCEEEHEEHHHHHHHHHHHHHCCCCCCCCC
SHEVTGFMQLTGY
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA