Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695445

Identifier: 209695445

GI number: 209695445

Start: 2127761

End: 2129173

Strand: Direct

Name: 209695445

Synonym: VSAL_I1986

Alternate gene names: NA

Gene position: 2127761-2129173 (Clockwise)

Preceding gene: 209695444

Following gene: 209695446

Centisome position: 63.99

GC content: 36.8

Gene sequence:

>1413_bases
ATGAAACAATATTTTAAGATGGCAATAATTGCTACGGCATTGTCTAGTGTGGTTGGTTGTCAAAGTACGAATAATACGGA
GACTTCGGTAGCTGTAGAAAAAAACAGAGCCGTATCATCAGTATCAACATTTGATGTATTACAAAAACAATACACTTTAG
ACAAAGCAACGTTTGATTCTGTTGAGCAGTTTAGACTCTACTCTGAGCCAACTTACAACATAATGACCGAATCATGGAAT
GATGCTAAAGAGATTTATTTAGAGGTAGAAAAAGAACCAGGATTAATTAATGAAGAATATTCGATGTTTTCTTCTGGATC
TTATGCCACTAAATACAGCGAATATATAACGAAAGCAGATGCAGAGCTTAGTAAGCTTAAAAGGTATAAAGAGCAAGCCG
ATGTTGTTCTTTCAGACGCGATATCACAAATGGATTACATGACATCTATTGATGTAAATACTTATTATCCTGCTGAGTTT
GCATCTCTAAATTCGCAATATAAAACGTTATTTATTACGGTGATTGAAGACGATATTGCAGAGGCTCAAACTGAGCAAGC
TTCTTTTTTAACGAATGCAAAAGCGATTGAAATAGATACAACGTTAAAGATTTATGTTTATCCTCTTGAAAAAGAATTTA
ATCAACTCTCTCAAAAAGGGTTTAAAACCATCGCGGCTATTAGTTACGGCCAAGCGAAAGCCGAATTAGACAAAACTCAG
AAAGCAGTTCAAGCGAATAACCGCGATGAAGCGCTAATTAGCAGTGCTGTAAATCGTACTGTTTTTCAATTAGATCATCT
TAAAAATATGGCGGCTGCAGTAAAATTACTGCAGGCGGTTAAAAATGGTCAATTTGAACAGCCAGTATTAGAGTTTGAAA
ATAAATTATTATCAATATCTCAGGCGATTAACGGGAACGATTACCGTGATCAACCATTAAGAACTCAAACAACGTCTATT
TTAGATTCGGTGCAGCAAATGCACGAAGCAAATAATACCGTTGTGTTAGAGAAAAAAATACAAGAACTCAATGCACAAAT
TAAAAGTCAAGCGCTTACCATTGAGAACCAAACTGAAGACCGTTCTGGTGTGCAAAAACAAGTGTTAGTTCTAACGCAGC
AATTAGAGCGTAACGATAATTTAATTAAAAATCTGAATGATGTGATTGCATCGTTTAAAGAGAAAGAACAAGCGACTGAA
AAAGTGGCCGAAGAGAAGGTGGAGCTTCCTGTTGTTGAGTCTGAAAAAACGGCGATTATTGCCGATGAAGTGAAGGCGAA
AAGTACGGAAGAGGTGGCAGTGGTTCCTGTCGTAACAAAGCCAAAAACTCAAGAAGCAGCAGTTAAAGCCGCTGTCGCTG
TGAAAGCAGTAAATGAAGAGACAACGAATGAAGGCGTGATTGTTTCTGAATAA

Upstream 100 bases:

>100_bases
TGAACTCATTGTAAATACTGATTTAATTGTTGTTATGTAGTAGGATTCGAAAAAAGTGCACACGCACTTTGTCTATTCAT
ATAATAAAAATAGGTTCAGA

Downstream 100 bases:

>100_bases
GTGGTTAAATAATCATTAGTCATTATAATTAAGCGTTCTAAACTACGGTCTAGAGCGCTTTTTTTATTTATTTTTTAAAG
TTTCTGATACACTCCGGCTG

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN
DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF
ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ
KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI
LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE
KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE

Sequences:

>Translated_470_residues
MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN
DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF
ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ
KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI
LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE
KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE
>Mature_470_residues
MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN
DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF
ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ
KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI
LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE
KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52537; Mature: 52537

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDS
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VEQFRLYSEPTYNIMTESWNDAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKAD
HHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
AELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEFASLNSQYKTLFITVIEDDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCEEEEEEEECHHHH
EAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ
HHHHHHHHHHCCCEEEEEECEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSIS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QAINGNDYRDQPLRTQTTSILDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTED
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCCC
RSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATEKVAEEKVELPVVESEKTAII
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEE
ADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE
EHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC
>Mature Secondary Structure
MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDS
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VEQFRLYSEPTYNIMTESWNDAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKAD
HHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
AELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEFASLNSQYKTLFITVIEDDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCEEEEEEEECHHHH
EAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ
HHHHHHHHHHCCCEEEEEECEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSIS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QAINGNDYRDQPLRTQTTSILDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTED
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCCC
RSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATEKVAEEKVELPVVESEKTAII
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEE
ADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE
EHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA