Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695430

Identifier: 209695430

GI number: 209695430

Start: 2113168

End: 2113908

Strand: Direct

Name: 209695430

Synonym: VSAL_I1971

Alternate gene names: NA

Gene position: 2113168-2113908 (Clockwise)

Preceding gene: 209695428

Following gene: 209695434

Centisome position: 63.55

GC content: 40.08

Gene sequence:

>741_bases
ATGTTTTTGTTTGTATTGAATATTTTGTTAAGTTTGGTTCTTGTTGTTGTTGGTGTATTGGCTTTTGGGGTCAGTGGTGG
CGATTTACCATTATTAGCCTTAGCGATCCCTATTTTATGGTTGTTGCCACAAGGAGGAGTCGCGACTTGGATTTTAATTG
CGGGTTTGTCTTTATTTGGTTTAACGTTAAGTTACCAACCTTTTCCCTTGTCTATTTCTGTTTGGACTTTGTTTCCGCTT
CTTATCGTTATCTTTTCTCATCGTAAAAGTATTCACTTGATTGTTTTTGTTGCGTCAGTGGTTATTGCTATGGAAGCGGG
GATCATGGCGTTGCAGTATGAAGGAAAATTACTAGGAAGTGCGTGGGCGACGTTGACTCAAATTATTAGTGTAATTTTAG
TTTGGGTTGCCGCGAGAAGTTGGAAACCGGTGAATAAGAACGCATGGTGGCCGATAGTCCTTGTTATTCCTTTATGGATT
GGTGGTTTGCAGCATGCTGCACTTGTCGCATTATCGATCACTGGATTGATTGTTTGTTTACAAAGTGTAGGGCGTTCAAA
ATACCACAGTTGGTTATCAATGCTTTCTTGGGTATTGCCAGTGCTAGGTTTTGCAACATTAATTATTTCACCGCAATTTG
AAGTACCCAATTCGATAATGGTGTCGTGGGTGATGATTCTTTTGATCGGTTGGGTTACGGATTTCATGCTTCAAGTCGAT
GAAGAAGAAACGCCAGATTAA

Upstream 100 bases:

>100_bases
TAATTAAAGTGAGGTGAATCAGTGATAAAACCCTATATTGCCGCTAAACTAAAACGATAACAAGGGTAACACCCTTAAGC
TAAACCATGGAGGGGAAGCG

Downstream 100 bases:

>100_bases
ATGGCTTTAATCTTATTTATTAGTGTTCTTTATGTAACTAAAGGCTTTTTGAGGGCCTTTAGTTACATAATCGATTAATG
GTTATTTTAGGGCTTGAGTA

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL
LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI
GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD
EEETPD

Sequences:

>Translated_246_residues
MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL
LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI
GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD
EEETPD
>Mature_246_residues
MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL
LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI
GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD
EEETPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26976; Mature: 26976

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LTLSYQPFPLSISVWTLFPLLIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGS
HHCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
AWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWIGGLQHAALVALSITGLIVCL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EEETPD
CCCCCC
>Mature Secondary Structure
MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LTLSYQPFPLSISVWTLFPLLIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGS
HHCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
AWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWIGGLQHAALVALSITGLIVCL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EEETPD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA