| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695430
Identifier: 209695430
GI number: 209695430
Start: 2113168
End: 2113908
Strand: Direct
Name: 209695430
Synonym: VSAL_I1971
Alternate gene names: NA
Gene position: 2113168-2113908 (Clockwise)
Preceding gene: 209695428
Following gene: 209695434
Centisome position: 63.55
GC content: 40.08
Gene sequence:
>741_bases ATGTTTTTGTTTGTATTGAATATTTTGTTAAGTTTGGTTCTTGTTGTTGTTGGTGTATTGGCTTTTGGGGTCAGTGGTGG CGATTTACCATTATTAGCCTTAGCGATCCCTATTTTATGGTTGTTGCCACAAGGAGGAGTCGCGACTTGGATTTTAATTG CGGGTTTGTCTTTATTTGGTTTAACGTTAAGTTACCAACCTTTTCCCTTGTCTATTTCTGTTTGGACTTTGTTTCCGCTT CTTATCGTTATCTTTTCTCATCGTAAAAGTATTCACTTGATTGTTTTTGTTGCGTCAGTGGTTATTGCTATGGAAGCGGG GATCATGGCGTTGCAGTATGAAGGAAAATTACTAGGAAGTGCGTGGGCGACGTTGACTCAAATTATTAGTGTAATTTTAG TTTGGGTTGCCGCGAGAAGTTGGAAACCGGTGAATAAGAACGCATGGTGGCCGATAGTCCTTGTTATTCCTTTATGGATT GGTGGTTTGCAGCATGCTGCACTTGTCGCATTATCGATCACTGGATTGATTGTTTGTTTACAAAGTGTAGGGCGTTCAAA ATACCACAGTTGGTTATCAATGCTTTCTTGGGTATTGCCAGTGCTAGGTTTTGCAACATTAATTATTTCACCGCAATTTG AAGTACCCAATTCGATAATGGTGTCGTGGGTGATGATTCTTTTGATCGGTTGGGTTACGGATTTCATGCTTCAAGTCGAT GAAGAAGAAACGCCAGATTAA
Upstream 100 bases:
>100_bases TAATTAAAGTGAGGTGAATCAGTGATAAAACCCTATATTGCCGCTAAACTAAAACGATAACAAGGGTAACACCCTTAAGC TAAACCATGGAGGGGAAGCG
Downstream 100 bases:
>100_bases ATGGCTTTAATCTTATTTATTAGTGTTCTTTATGTAACTAAAGGCTTTTTGAGGGCCTTTAGTTACATAATCGATTAATG GTTATTTTAGGGCTTGAGTA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD EEETPD
Sequences:
>Translated_246_residues MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD EEETPD >Mature_246_residues MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFGLTLSYQPFPLSISVWTLFPL LIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGSAWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWI GGLQHAALVALSITGLIVCLQSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD EEETPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26976; Mature: 26976
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFG CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LTLSYQPFPLSISVWTLFPLLIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGS HHCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH AWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWIGGLQHAALVALSITGLIVCL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC EEETPD CCCCCC >Mature Secondary Structure MFLFVLNILLSLVLVVVGVLAFGVSGGDLPLLALAIPILWLLPQGGVATWILIAGLSLFG CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LTLSYQPFPLSISVWTLFPLLIVIFSHRKSIHLIVFVASVVIAMEAGIMALQYEGKLLGS HHCCCCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH AWATLTQIISVILVWVAARSWKPVNKNAWWPIVLVIPLWIGGLQHAALVALSITGLIVCL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVGRSKYHSWLSMLSWVLPVLGFATLIISPQFEVPNSIMVSWVMILLIGWVTDFMLQVD HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC EEETPD CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA