Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695372

Identifier: 209695372

GI number: 209695372

Start: 2038427

End: 2039446

Strand: Direct

Name: 209695372

Synonym: VSAL_I1905

Alternate gene names: NA

Gene position: 2038427-2039446 (Clockwise)

Preceding gene: 209695371

Following gene: 209695373

Centisome position: 61.3

GC content: 35.2

Gene sequence:

>1020_bases
ATGTCAGATAGCCTTATCGAGGATTCTCGAACCCAAACTAAGATAATAAGATATACCGTCGGTGTTGGCTTAGCGGTGTT
TTTAGCTGCGTTGATTGATTGGCCATTGGCGTTTGTAGCACCAGTATTTGTCGCTAAATTTTTATTAGATAAACCAGAGT
TAAACAAAGAAACCATTTATGAATTGATGCTCGCGATGGTCGTAACCATTGCGCTTGGATTATTTTTATCGAATGGCATC
ACCCATTATCCAATTCCAATGTTAATCCTTATCGGATTAATGATGTTGTGGGGGTATTATTTGTTTACTGATCCTAAGTG
GAACTTGTTTGCAACAATATTAATTATTGCGGTACTAATGTTGCCCTTTATGGCGATATCAAATCCTAGTGTGTCTGTAT
TTTTAGCCATCGGATTAAGCAGTTCTGGAGTTGTCGCGGTACTTATTTTTGCTTTTGTTCATATTTACTTCCCTGAGTCA
GAATCGAAATTCACAGGTTATCAATCTTCCCCGTTATCAAAGCAACAACGATGGTATGCGGCGTTTAGAGCGATGATTAT
TTCTTTTCCTGTAGTTTGTTTTTTCTTTATTTTTCAAATATCAGAAGCACTATTAACGATGATGTTTATTGCGTTGCTGT
CATTAATGATAACAGGTGAGAAATCGATTAAATTAAGTGCATTTTTAATTCTTAGCAATGGTATTGGTGGTTTACTCGCC
ATCGGTGTATTTGGTGTTTTAAGCCTTGCACCTAACATCATTTTTTATACATTATTTATTTCACTTGTGGCCATTATTAT
GGCGACACAAATTTATACTAAACCAGAAAAAGCCCCGATTTACGCAACCGCATTTAGTACTGTACTTGTGTTGTTAGGCA
GTACATTAATGAGTTCAGGGGAGATTGATAACAATATGTTTATACGTATATTTCAATTATTTTTGATTGGAATTTATATG
ATCGTTGTTTCTTTCTTTTTAGAGACGCGTCATTGGAGATTTTTAACTATGCAAACTTAA

Upstream 100 bases:

>100_bases
CGAATTGGTGGCCAAGCGGATGTGATCGTCTACAGTGGTGATAATGTTATTTTTAATACTATTGGTAAATTGTGGATCCG
CTTTGTGAGCTTGATGTCTT

Downstream 100 bases:

>100_bases
GTGCGCATAAATAACAAGGAGTGTTTATGAAACTTGAAGCGAACTTTTCAAAACAAGCAATTGATGCGTTTATAAAAATT
GCAGCCATTGCGATTCTACT

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGI
THYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPES
ESKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA
IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYM
IVVSFFLETRHWRFLTMQT

Sequences:

>Translated_339_residues
MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGI
THYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPES
ESKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA
IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYM
IVVSFFLETRHWRFLTMQT
>Mature_338_residues
SDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGIT
HYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESE
SKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLAI
GVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYMI
VVSFFLETRHWRFLTMQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37870; Mature: 37739

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ELMLAMVVTIALGLFLSNGITHYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESESKFTGYQSSPLSKQQRWYA
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
AFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHH
IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
EIDNNMFIRIFQLFLIGIYMIVVSFFLETRHWRFLTMQT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure 
SDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ELMLAMVVTIALGLFLSNGITHYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLM
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESESKFTGYQSSPLSKQQRWYA
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
AFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHH
IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
EIDNNMFIRIFQLFLIGIYMIVVSFFLETRHWRFLTMQT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA