Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695360

Identifier: 209695360

GI number: 209695360

Start: 2028427

End: 2028729

Strand: Direct

Name: 209695360

Synonym: VSAL_I1893

Alternate gene names: NA

Gene position: 2028427-2028729 (Clockwise)

Preceding gene: 209695359

Following gene: 209695361

Centisome position: 61.0

GC content: 35.97

Gene sequence:

>303_bases
GTGAGTAATATCGCTGGGAAAATAGACAGTGTTCATAGCCCAATAAATAATATCATCGTTAAGTTGATATTGATTGGAGC
CGCACTTTTCCACATGGGAATGCTTATGTGGGAGCCAACGGTATATTCAGAAAATATCCGTGGTTTTAGTGGGTTAATGG
CGCCAGCATTGATTTACGCAGTATGTACTGCGTTTATCTTTGTTGTGGGTTTTATTCCACAAAAGTGGGGTTGGAAACTA
CTATTTAGTCCTTATTTTTCAATGATGATATTAAGTTACTTTAGTTATCTCTATTTTATTTGA

Upstream 100 bases:

>100_bases
ATGTGGTATTTTGCTTGGATTCTAGGTGTGCTACTAGCATGCTCATTTGCAATCATTAATGCTCTTTGGTTAGAGCACTC
AGAAATGATGGATAAAGACA

Downstream 100 bases:

>100_bases
TTTTATAATTAATAAAATGTGAACATTGGAACATCATACTAAGCGGCTTGTTACTTTTTTAGGTAATAAGCCGCTTTATT
TTTGGCTATTAAGTTCAAAA

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MSNIAGKIDSVHSPINNIIVKLILIGAALFHMGMLMWEPTVYSENIRGFSGLMAPALIYAVCTAFIFVVGFIPQKWGWKL
LFSPYFSMMILSYFSYLYFI

Sequences:

>Translated_100_residues
MSNIAGKIDSVHSPINNIIVKLILIGAALFHMGMLMWEPTVYSENIRGFSGLMAPALIYAVCTAFIFVVGFIPQKWGWKL
LFSPYFSMMILSYFSYLYFI
>Mature_99_residues
SNIAGKIDSVHSPINNIIVKLILIGAALFHMGMLMWEPTVYSENIRGFSGLMAPALIYAVCTAFIFVVGFIPQKWGWKLL
FSPYFSMMILSYFSYLYFI

Specific function: Unknown

COG id: COG3790

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11369; Mature: 11238

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIAGKIDSVHSPINNIIVKLILIGAALFHMGMLMWEPTVYSENIRGFSGLMAPALIYA
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHH
VCTAFIFVVGFIPQKWGWKLLFSPYFSMMILSYFSYLYFI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNIAGKIDSVHSPINNIIVKLILIGAALFHMGMLMWEPTVYSENIRGFSGLMAPALIYA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHH
VCTAFIFVVGFIPQKWGWKLLFSPYFSMMILSYFSYLYFI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA