| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is ybgT [C]
Identifier: 209695359
GI number: 209695359
Start: 2028327
End: 2028434
Strand: Direct
Name: ybgT [C]
Synonym: VSAL_I1892
Alternate gene names: 209695359
Gene position: 2028327-2028434 (Clockwise)
Preceding gene: 209695358
Following gene: 209695360
Centisome position: 61.0
GC content: 37.96
Gene sequence:
>108_bases ATGTGGTATTTTGCTTGGATTCTAGGTGTGCTACTAGCATGCTCATTTGCAATCATTAATGCTCTTTGGTTAGAGCACTC AGAAATGATGGATAAAGACAGTGAGTAA
Upstream 100 bases:
>100_bases TCCTTGCTTACACAGCATGGACGTATTATAAAATGTTTGGTCGTATTGATACTAAATTTGTTGAAGACAACAAAAATTCG CTTTATTAAGGAGTATAACA
Downstream 100 bases:
>100_bases TATCGCTGGGAAAATAGACAGTGTTCATAGCCCAATAAATAATATCATCGTTAAGTTGATATTGATTGGAGCCGCACTTT TCCACATGGGAATGCTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 35; Mature: 35
Protein sequence:
>35_residues MWYFAWILGVLLACSFAIINALWLEHSEMMDKDSE
Sequences:
>Translated_35_residues MWYFAWILGVLLACSFAIINALWLEHSEMMDKDSE >Mature_35_residues MWYFAWILGVLLACSFAIINALWLEHSEMMDKDSE
Specific function: Unknown
COG id: COG4890
COG function: function code S; Predicted outer membrane lipoprotein
Gene ontology:
Cell location: Transmembrane, Inner membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 4135; Mature: 4135
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 8.6 %Met (Translated Protein) 11.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 8.6 %Met (Mature Protein) 11.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWYFAWILGVLLACSFAIINALWLEHSEMMDKDSE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MWYFAWILGVLLACSFAIINALWLEHSEMMDKDSE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA