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The map label for this gene is ybgC [H]

Identifier: 209695361

GI number: 209695361

Start: 2028919

End: 2029323

Strand: Direct

Name: ybgC [H]

Synonym: VSAL_I1894

Alternate gene names: 209695361

Gene position: 2028919-2029323 (Clockwise)

Preceding gene: 209695360

Following gene: 209695362

Centisome position: 61.02

GC content: 36.54

Gene sequence:

>405_bases
ATGGCAGTTTTCAAATGGCCTATCACGGTTTACTATGAAGACACCGATGCAGGTGGCGTAGTTTATCACTCTAATTATTT
AAAGTTTTTTGAAAGAGCCAGAACCGAATTATTACGAGAAAAAGGAGTATCTCAAGGGATACTGCTGCAAGAGTCTCTCG
GATTTGTGGTTAAACATGTTGATATAGATTTTATACAAGGTGCTCGTTTAGATGAGCAGCTCACAGTTGAAACATTCATA
GAAGAAATTAAAAGGGTATCGCTGACCTTTTGTCAGTTATTGGTTAATTTTGAGGGTAAAGTATTGTGCAAAGCTACAGT
TAAGGTAGCCTGTATTGATAACGCTAAAATGAAACCAAAAGCGATACCATTATTTATATTATCGGAGATATCTTGTGACA
GGTGA

Upstream 100 bases:

>100_bases
TAAGTTCAAAATTTGGTGATTCACCTAGTGACGATAGGTAATTATCAGTTATAGTTAACTACTGATTTCTCAATAAAAAA
GAAAAAGAGGGTGATATAAA

Downstream 100 bases:

>100_bases
ACTATCAATTCTCGATCTATTTTTACACGCTAGTTTATTAGTTAAGATCGTGATGCTTATTCTATTAAGCTTGTCTGTAA
TGTCGTGGGCAATGATTTTT

Product: acyl-CoA thioester hydrolase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAVFKWPITVYYEDTDAGGVVYHSNYLKFFERARTELLREKGVSQGILLQESLGFVVKHVDIDFIQGARLDEQLTVETFI
EEIKRVSLTFCQLLVNFEGKVLCKATVKVACIDNAKMKPKAIPLFILSEISCDR

Sequences:

>Translated_134_residues
MAVFKWPITVYYEDTDAGGVVYHSNYLKFFERARTELLREKGVSQGILLQESLGFVVKHVDIDFIQGARLDEQLTVETFI
EEIKRVSLTFCQLLVNFEGKVLCKATVKVACIDNAKMKPKAIPLFILSEISCDR
>Mature_133_residues
AVFKWPITVYYEDTDAGGVVYHSNYLKFFERARTELLREKGVSQGILLQESLGFVVKHVDIDFIQGARLDEQLTVETFIE
EIKRVSLTFCQLLVNFEGKVLCKATVKVACIDNAKMKPKAIPLFILSEISCDR

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=127, Percent_Identity=48.8188976377953, Blast_Score=139, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15280; Mature: 15149

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVFKWPITVYYEDTDAGGVVYHSNYLKFFERARTELLREKGVSQGILLQESLGFVVKHV
CCEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHEEHCC
DIDFIQGARLDEQLTVETFIEEIKRVSLTFCQLLVNFEGKVLCKATVKVACIDNAKMKPK
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCC
AIPLFILSEISCDR
CCCEEEEECCCCCC
>Mature Secondary Structure 
AVFKWPITVYYEDTDAGGVVYHSNYLKFFERARTELLREKGVSQGILLQESLGFVVKHV
CEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHEEHCC
DIDFIQGARLDEQLTVETFIEEIKRVSLTFCQLLVNFEGKVLCKATVKVACIDNAKMKPK
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCC
AIPLFILSEISCDR
CCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]