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The map label for this gene is cydB [H]

Identifier: 209695358

GI number: 209695358

Start: 2027179

End: 2028315

Strand: Direct

Name: cydB [H]

Synonym: VSAL_I1891

Alternate gene names: 209695358

Gene position: 2027179-2028315 (Clockwise)

Preceding gene: 209695357

Following gene: 209695359

Centisome position: 60.96

GC content: 39.4

Gene sequence:

>1137_bases
ATGTTTGATTACGAAGTATTGCGATTTGTTTGGTGGGTATTGATTGGTGTATTACTGATTGGTTTCGCGGTAACAGATGG
TTTTGATATGGGGGTAGGTACACTAGTGCCTATCATCGGTAAAACAGATACAGAACGTCGAGTGATGATTAACTCAATCG
CCCCTCACTGGGAAGGCAACCAAGTTTGGTTAGTAACAGCAGGCGGTGCATTATTTGCTGCTTGGCCTTTAGTGTATGCT
GCTTCATTCTCTGGCTTTTACTTAGCTATGATTCTGACATTAGCTGCATTATGGTTCCGCCCTGTTGGGTTTGATTATCG
TTCTAAAATTGAAGATAAACGCTGGCGTTCAGCGTGGGATGCTGCGATCTTCATTGGTAGCTTTGTTCCACCAGTCATCT
TTGGTGTTGCTTTTGGTAACTTACTTCAAGGTGTTCCATTTGAACTGAACAACCTAATGATGCTTAAGTATCATGGTGGT
TTCTTTGACTTATTAAATCCATTTGCATTGGTATGTGGTCTAGTGAGCTCTGCAATGTTTGTACTGCAAGGTTCAACATG
GCTACAAATGAAAACAACGGATCAAATTCACGCTAGAGCAAGTCAAGTTTCTATGATTTGTGCTGCGTTAGTAATTGTTC
TGTTTACTATTGCTGGCTTTTGGGCTCAAAGCATTAATGGGTTTGTGATCACGAGTGTTATGGATCATAACGCACCATCA
GATCCATTAAATAAAGAAGTTATCCGTCAAGTGGGCGCTTTATTCTTGAACTTCAAAGAATACCCATTGTTATGGATAGC
ACCTGCTCTTGCGGTAGTTATGCCTCTTATTGTTATGATTACAACTAAGTTGAAGAGACCTGGAATTGCTTTCATCGCAT
CAAGTCTGACTAATGCTGGTGTGATCTTAACTTCTGGTTTTGCATTATTCCCATTCGTAATGCCATCAAGTTTAAATCCT
AACCATAGTTTGACTATGTGGGATTCAACATCAAGCGAATTAACACTAAACATTATGACAGTGGTAGCTGCTGTTATGAT
CCCAATCATCCTTGCTTACACAGCATGGACGTATTATAAAATGTTTGGTCGTATTGATACTAAATTTGTTGAAGACAACA
AAAATTCGCTTTATTAA

Upstream 100 bases:

>100_bases
GTAGCTTGAAAACTGGTCGCTATCACTTTGAACAAGACGGTCAAGGTTCTGAAGCAAAGTTAACTCGCGAAGTAGAAGCA
TAAAAACGGAGATTTGAGCA

Downstream 100 bases:

>100_bases
GGAGTATAACAATGTGGTATTTTGCTTGGATTCTAGGTGTGCTACTAGCATGCTCATTTGCAATCATTAATGCTCTTTGG
TTAGAGCACTCAGAAATGAT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFDYEVLRFVWWVLIGVLLIGFAVTDGFDMGVGTLVPIIGKTDTERRVMINSIAPHWEGNQVWLVTAGGALFAAWPLVYA
ASFSGFYLAMILTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFELNNLMMLKYHGG
FFDLLNPFALVCGLVSSAMFVLQGSTWLQMKTTDQIHARASQVSMICAALVIVLFTIAGFWAQSINGFVITSVMDHNAPS
DPLNKEVIRQVGALFLNFKEYPLLWIAPALAVVMPLIVMITTKLKRPGIAFIASSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLNIMTVVAAVMIPIILAYTAWTYYKMFGRIDTKFVEDNKNSLY

Sequences:

>Translated_378_residues
MFDYEVLRFVWWVLIGVLLIGFAVTDGFDMGVGTLVPIIGKTDTERRVMINSIAPHWEGNQVWLVTAGGALFAAWPLVYA
ASFSGFYLAMILTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFELNNLMMLKYHGG
FFDLLNPFALVCGLVSSAMFVLQGSTWLQMKTTDQIHARASQVSMICAALVIVLFTIAGFWAQSINGFVITSVMDHNAPS
DPLNKEVIRQVGALFLNFKEYPLLWIAPALAVVMPLIVMITTKLKRPGIAFIASSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLNIMTVVAAVMIPIILAYTAWTYYKMFGRIDTKFVEDNKNSLY
>Mature_378_residues
MFDYEVLRFVWWVLIGVLLIGFAVTDGFDMGVGTLVPIIGKTDTERRVMINSIAPHWEGNQVWLVTAGGALFAAWPLVYA
ASFSGFYLAMILTLAALWFRPVGFDYRSKIEDKRWRSAWDAAIFIGSFVPPVIFGVAFGNLLQGVPFELNNLMMLKYHGG
FFDLLNPFALVCGLVSSAMFVLQGSTWLQMKTTDQIHARASQVSMICAALVIVLFTIAGFWAQSINGFVITSVMDHNAPS
DPLNKEVIRQVGALFLNFKEYPLLWIAPALAVVMPLIVMITTKLKRPGIAFIASSLTNAGVILTSGFALFPFVMPSSLNP
NHSLTMWDSTSSELTLNIMTVVAAVMIPIILAYTAWTYYKMFGRIDTKFVEDNKNSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=62.7968337730871, Blast_Score=504, Evalue=1e-144,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=55.4089709762533, Blast_Score=437, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41950; Mature: 41950

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEVLRFVWWVLIGVLLIGFAVTDGFDMGVGTLVPIIGKTDTERRVMINSIAPHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEHHCCCCCCCC
QVWLVTAGGALFAAWPLVYAASFSGFYLAMILTLAALWFRPVGFDYRSKIEDKRWRSAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAIFIGSFVPPVIFGVAFGNLLQGVPFELNNLMMLKYHGGFFDLLNPFALVCGLVSSAMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VLQGSTWLQMKTTDQIHARASQVSMICAALVIVLFTIAGFWAQSINGFVITSVMDHNAPS
HEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
DPLNKEVIRQVGALFLNFKEYPLLWIAPALAVVMPLIVMITTKLKRPGIAFIASSLTNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VILTSGFALFPFVMPSSLNPNHSLTMWDSTSSELTLNIMTVVAAVMIPIILAYTAWTYYK
EEEECCHHHHHHHCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRIDTKFVEDNKNSLY
HHHCCCHHEEECCCCCCC
>Mature Secondary Structure
MFDYEVLRFVWWVLIGVLLIGFAVTDGFDMGVGTLVPIIGKTDTERRVMINSIAPHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEHHCCCCCCCC
QVWLVTAGGALFAAWPLVYAASFSGFYLAMILTLAALWFRPVGFDYRSKIEDKRWRSAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAIFIGSFVPPVIFGVAFGNLLQGVPFELNNLMMLKYHGGFFDLLNPFALVCGLVSSAMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
VLQGSTWLQMKTTDQIHARASQVSMICAALVIVLFTIAGFWAQSINGFVITSVMDHNAPS
HEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
DPLNKEVIRQVGALFLNFKEYPLLWIAPALAVVMPLIVMITTKLKRPGIAFIASSLTNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VILTSGFALFPFVMPSSLNPNHSLTMWDSTSSELTLNIMTVVAAVMIPIILAYTAWTYYK
EEEECCHHHHHHHCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRIDTKFVEDNKNSLY
HHHCCCHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]