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The map label for this gene is cydA [H]

Identifier: 209695357

GI number: 209695357

Start: 2025572

End: 2027161

Strand: Direct

Name: cydA [H]

Synonym: VSAL_I1890

Alternate gene names: 209695357

Gene position: 2025572-2027161 (Clockwise)

Preceding gene: 209695356

Following gene: 209695358

Centisome position: 60.92

GC content: 40.38

Gene sequence:

>1590_bases
ATGATCACTGATGTAGTGGAGTTATCGCGGTTGCAGTTTGCAATGACAGCGATGTATCACTTCCTATTCGTTCCTCTGAC
TTTAGGTATGGCCTTTCTATTGGCTATCATGGAGTCGTTATATGTAATGACCAACAAACAAATCTACAAGGACATGACAA
AGTTCTGGGGTAAGTTATTTGGTATTAACTTCGCATTAGGTGTAGCAACAGGCCTAACCATGGAGTTCCAGTTTGGTACA
AACTGGTCTTACTATTCTCACTATGTTGGTGATATTTTCGGTGCGCCTCTTGCGATCGAAGCACTGATGGCTTTCATGCT
TGAATCTACTTTTGTAGGACTATTTTTCTTTGGTTGGGATCGTTTATCAAAACGTCAGCATCTTACAGTAACGTGGTTAG
TTGCTTTAGGTTCGAATTTCTCAGCGCTTTGGATTCTAGTAGCAAACGGTTGGATGCAAAACCCTGTCGGTGCTGAATTT
AATTTTGAAACGATGCGTATGGAAATGGTTAGCTTCGCTGAAGTTGTACTAAACCCTGTCGCTCAAGTTAAATTCGTTCA
TACCGTTGCTTCTGGTTACACCGCTGGCGCAATGTTTGTTTTAGGTATTAGTTCATACTACCTACTAAAAGGTCGTGATG
TTGCCTTTGCTCGTCGTTCATTCGCAATTGCTGCGTCTTTCGGCATGGCATCAATTTTATCTGTAATGGTACTTGGTGAT
GAATCTGGTTATGAATTGGGTGAAGTTCAACAAGTTAAGCTAGCAGCGATTGAAGCTGAATGGCATACAGAAGAAGCACC
TGCGGCTTTCACCGTATTTGGCTTACCAAATCAAGAAACGATGGAAACGGATTATGCAATTAAGATCCCTTATGTTATGG
GTATTATTGCAACGCGTTCATTAGATAAGCAAGTCACTGGCTTACGCGATCTTAAAGCACAGCACGAAGTTCGTATTCGT
AACGGTATGATCGCTTATGACCTTCTTGAAAAATTACGTAATGGTGATAAAACACCTGAAAATATAGCAGCATTTGATGA
TGTTAAGCATGACTTAGGTTATGGCTTATTGCTTAAGCGTTATACTGATAAAGTTGTTGATGCAACTGAAGATCAGATTA
AAGCGGCAGCAGATGATTCTATTCCAAATGTTTTACCATTATTCTTCTCTTTCCGCATAATGGTTGCTTGTGGCGTAGCA
ATGCTACTTATTTTTGGCCTTGCGTTTTATCAAACGTGTCGTCAAAAAATTGGTCAAAAACCATGGTTACTTAAAGCGGC
ATTATTCGGTATGCCACTGCCGTGGATCGCAATTGAAGCGGGTTGGTTTGTTGCAGAATATGGTCGTCAGCCATGGGCAG
TTGGTGAAATACTACCTGTACATGTTGCCGCATCATCACTCACTGTTACTGAAGTTTTAATTTCAATAGCTGCAATTATT
AGCTTATATACTATTTTCTTGATTGCTGAAGTTTACCTAATGGTTAAATTCGCACGTAAAGGACCTAGTAGCTTGAAAAC
TGGTCGCTATCACTTTGAACAAGACGGTCAAGGTTCTGAAGCAAAGTTAACTCGCGAAGTAGAAGCATAA

Upstream 100 bases:

>100_bases
TACTAATACAATTATAACTATTAGAGCTAAATAAAAAGTGCCACGTTCACCCAAAAGTGTGAAAGCACTGTGTCATTCAG
CCTGACACAAAGGAGTTCTC

Downstream 100 bases:

>100_bases
AAACGGAGATTTGAGCAATGTTTGATTACGAAGTATTGCGATTTGTTTGGTGGGTATTGATTGGTGTATTACTGATTGGT
TTCGCGGTAACAGATGGTTT

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFMLESTFVGLFFFGWDRLSKRQHLTVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTAGAMFVLGISSYYLLKGRDVAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVFGLPNQETMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKAQHEVRIR
NGMIAYDLLEKLRNGDKTPENIAAFDDVKHDLGYGLLLKRYTDKVVDATEDQIKAAADDSIPNVLPLFFSFRIMVACGVA
MLLIFGLAFYQTCRQKIGQKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVHVAASSLTVTEVLISIAAII
SLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQDGQGSEAKLTREVEA

Sequences:

>Translated_529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFMLESTFVGLFFFGWDRLSKRQHLTVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTAGAMFVLGISSYYLLKGRDVAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVFGLPNQETMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKAQHEVRIR
NGMIAYDLLEKLRNGDKTPENIAAFDDVKHDLGYGLLLKRYTDKVVDATEDQIKAAADDSIPNVLPLFFSFRIMVACGVA
MLLIFGLAFYQTCRQKIGQKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVHVAASSLTVTEVLISIAAII
SLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQDGQGSEAKLTREVEA
>Mature_529_residues
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEALMAFMLESTFVGLFFFGWDRLSKRQHLTVTWLVALGSNFSALWILVANGWMQNPVGAEF
NFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTAGAMFVLGISSYYLLKGRDVAFARRSFAIAASFGMASILSVMVLGD
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVFGLPNQETMETDYAIKIPYVMGIIATRSLDKQVTGLRDLKAQHEVRIR
NGMIAYDLLEKLRNGDKTPENIAAFDDVKHDLGYGLLLKRYTDKVVDATEDQIKAAADDSIPNVLPLFFSFRIMVACGVA
MLLIFGLAFYQTCRQKIGQKPWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVHVAASSLTVTEVLISIAAII
SLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQDGQGSEAKLTREVEA

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=517, Percent_Identity=73.8878143133462, Blast_Score=812, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=60.9126984126984, Blast_Score=639, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59022; Mature: 59022

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALMAFMLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSKRQHLTVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVSFAEVVLNPV
HHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYTAGAMFVLGISSYYLLKGRDVAFARRSFAIAASFGMASILSVMVLGD
HHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVFGLPNQETMETDYAIKIPYVMGIIATRS
CCCCCCCCHHEEHEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHH
LDKQVTGLRDLKAQHEVRIRNGMIAYDLLEKLRNGDKTPENIAAFDDVKHDLGYGLLLKR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHH
YTDKVVDATEDQIKAAADDSIPNVLPLFFSFRIMVACGVAMLLIFGLAFYQTCRQKIGQK
HHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVHVAASSLTVTEVLISIAAII
CHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
SLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQDGQGSEAKLTREVEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MITDVVELSRLQFAMTAMYHFLFVPLTLGMAFLLAIMESLYVMTNKQIYKDMTKFWGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALMAFMLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLSKRQHLTVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVSFAEVVLNPV
HHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYTAGAMFVLGISSYYLLKGRDVAFARRSFAIAASFGMASILSVMVLGD
HHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYELGEVQQVKLAAIEAEWHTEEAPAAFTVFGLPNQETMETDYAIKIPYVMGIIATRS
CCCCCCCCHHEEHEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHH
LDKQVTGLRDLKAQHEVRIRNGMIAYDLLEKLRNGDKTPENIAAFDDVKHDLGYGLLLKR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHH
YTDKVVDATEDQIKAAADDSIPNVLPLFFSFRIMVACGVAMLLIFGLAFYQTCRQKIGQK
HHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLLKAALFGMPLPWIAIEAGWFVAEYGRQPWAVGEILPVHVAASSLTVTEVLISIAAII
CHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
SLYTIFLIAEVYLMVKFARKGPSSLKTGRYHFEQDGQGSEAKLTREVEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]