Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695173
Identifier: 209695173
GI number: 209695173
Start: 1771566
End: 1772036
Strand: Direct
Name: 209695173
Synonym: VSAL_I1677
Alternate gene names: NA
Gene position: 1771566-1772036 (Clockwise)
Preceding gene: 209695171
Following gene: 209695174
Centisome position: 53.28
GC content: 26.54
Gene sequence:
>471_bases ATGACATTGAATAAAACTATAGATATCTTTAAAGACCTTTATCTAGGAAGTTCATTTGATTCCTATATCCATTTACTTAG AGGCAATATTTTTTCTCATCTTACAGATACGATTGCTATCTTTGCAGCTTTAGCAGCTATCGCATTGCCACTTGCCCAGC AGACTTTTCAATGGGCTTCTGAAAAATACAAATCAGACCATTTAATAGACTTCATAGAAACAAATTCACCTATTCATCCA AAGTTATTAAACAAGAGTATATTCATATATTTTATATGTATACTTTGTTACAAAGTGTTAACTCCACTTTTTAATGACTT TTTCTTCATTATATCCACAGTTATTATCCTCATTACATTTATAATTATCATTAATATTTCATTAAGATATTTAAGTTATA CTTATGATATGTCTAAAGGTATTAAAGGTATTAGAAAAAATAATATCAAAAAATATAGACCTAAAAAATGA
Upstream 100 bases:
>100_bases ATATGTTGATGTATAAAGAAAAATAGTAGAATCAATCTAAGCTAGGACGCACTCAGGACACTTTAGTGTATAAACTTCAT AGCAATCTAACAAAAGAAGT
Downstream 100 bases:
>100_bases AACATATTCAAATTTAGAAATTTCCATATTAAGCGATTATGAATCCTATATGATAGCATCTGACTCTTCATATTTAGATT TAAGTGATAATTTTACTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHP KLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK
Sequences:
>Translated_156_residues MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHP KLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK >Mature_155_residues TLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHPK LLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18128; Mature: 17997
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWAS CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKYKSDHLIDFIETNSPIHPKLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITF HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWAS CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKYKSDHLIDFIETNSPIHPKLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITF HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA