Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695173

Identifier: 209695173

GI number: 209695173

Start: 1771566

End: 1772036

Strand: Direct

Name: 209695173

Synonym: VSAL_I1677

Alternate gene names: NA

Gene position: 1771566-1772036 (Clockwise)

Preceding gene: 209695171

Following gene: 209695174

Centisome position: 53.28

GC content: 26.54

Gene sequence:

>471_bases
ATGACATTGAATAAAACTATAGATATCTTTAAAGACCTTTATCTAGGAAGTTCATTTGATTCCTATATCCATTTACTTAG
AGGCAATATTTTTTCTCATCTTACAGATACGATTGCTATCTTTGCAGCTTTAGCAGCTATCGCATTGCCACTTGCCCAGC
AGACTTTTCAATGGGCTTCTGAAAAATACAAATCAGACCATTTAATAGACTTCATAGAAACAAATTCACCTATTCATCCA
AAGTTATTAAACAAGAGTATATTCATATATTTTATATGTATACTTTGTTACAAAGTGTTAACTCCACTTTTTAATGACTT
TTTCTTCATTATATCCACAGTTATTATCCTCATTACATTTATAATTATCATTAATATTTCATTAAGATATTTAAGTTATA
CTTATGATATGTCTAAAGGTATTAAAGGTATTAGAAAAAATAATATCAAAAAATATAGACCTAAAAAATGA

Upstream 100 bases:

>100_bases
ATATGTTGATGTATAAAGAAAAATAGTAGAATCAATCTAAGCTAGGACGCACTCAGGACACTTTAGTGTATAAACTTCAT
AGCAATCTAACAAAAGAAGT

Downstream 100 bases:

>100_bases
AACATATTCAAATTTAGAAATTTCCATATTAAGCGATTATGAATCCTATATGATAGCATCTGACTCTTCATATTTAGATT
TAAGTGATAATTTTACTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHP
KLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK

Sequences:

>Translated_156_residues
MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHP
KLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK
>Mature_155_residues
TLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWASEKYKSDHLIDFIETNSPIHPK
LLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITFIIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18128; Mature: 17997

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWAS
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYKSDHLIDFIETNSPIHPKLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITF
HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TLNKTIDIFKDLYLGSSFDSYIHLLRGNIFSHLTDTIAIFAALAAIALPLAQQTFQWAS
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYKSDHLIDFIETNSPIHPKLLNKSIFIYFICILCYKVLTPLFNDFFFIISTVIILITF
HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIINISLRYLSYTYDMSKGIKGIRKNNIKKYRPKK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA