Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695174
Identifier: 209695174
GI number: 209695174
Start: 1772086
End: 1773774
Strand: Direct
Name: 209695174
Synonym: VSAL_I1678
Alternate gene names: NA
Gene position: 1772086-1773774 (Clockwise)
Preceding gene: 209695173
Following gene: 209695175
Centisome position: 53.29
GC content: 27.71
Gene sequence:
>1689_bases ATGATAGCATCTGACTCTTCATATTTAGATTTAAGTGATAATTTTACTGATCTTGGATTTAGCATTATTAATAATCAAGA ATCAATTGATACAAACATCATAAATACATACATTAATGGTTTAGAAAAAATATTATGTTCCACCCCTATTTTATCTAACG ACGATAAGTACAAAAATGTGGCTTGTTGGTATATACATTTTGTCCAGGGACTAGTTGTAAAGGAAGAAAAATATTCATAT CTTTTAAAATCAATATGTTATATAGTAAATAGTATTGAATCTCGAAGAACTGACAATTACAAACCTTTACTTACTGGCCG TATATATATGAACTTTACATATATAACAACTTGGCCTAGCGGTCTAGGTAAAGCTCTAATTGAACATTTCAATCAGCTCA CAGATATATGCATTGATAGTGATAATAAAGATAGCATCGTTAATTTATATAGCGAATTAATATCCAGTTTAGGGTTTGGT ATTATCACTACAAATGAACTTATTTATTACTTTAACGATTATAAAGTTAATAACCATGAATATTCAAAATTAATCGAGTT ATCAAATTACATAGAAGAAACATTAAATAATGAAAGTTTAACTTTTGATTATAAAAAAATAAAAGAAATAGCTCCGGCGT CATTTACCCAAAAAAAAGGTGATGATGATGACATATTGAAATCATTTGAAAATAAAATAAATGATTATAACTTTCAAAAA ATGGCGTTCAAAAACATACACATTTTCATTTCAAAGATATCTAAATATGATACAGGATTGTTAATTGATATTTGCGAACT TAAAAACCCAATGTCATCAGAAATAAACATGCTAACATGTGAATTACTGCCAAATAGTATTCAAGATATTTTCAACTCAT TAATATCACTAGATCGCGATGACTTATTAATGTCTCGCACAGGTGAAATGCATAACCAATACCTGATTAAGGGTTTATCT ATGCTATTCATATATAAGGTGTGTGTTTTAGTAAAAGATGACAGCAGTACCATTAATTTAGATTTCATGTCAAAATATAA ACTAAGTGATTTAGATAAAATAAACAATTTACTTAAAAGTATTTCAGACATAACAAGTCACTTAGTTAACCATCAAAAAA TCAATGACTTATGCCTACTCCACTCTCTAGCTATGGATAAGGTAAAAGATAAAAGAATCGAAATAATTGAGATAATTGAG ATAATCAGCAATGGTATAAATAAAAACATCGACGAGTTAAAGTCATCTGGTAAATTGAGTCATGAAAAAATCAATACATT TTTAAATTCATTTCCAAAAGATAAAAATGTCATAGAAAATCATGAACCACTTTTAAAGAAATTACTAATTTCAAAAAATG CAAAATTCAAACACACATCTAGCTTTAAACGCACTACTTTCATTGATGATCCAAGAGTTCATACGATTTTTGATAACATT GGACAATCTGTTATTAACGGTCATTTTGACCTTATATATAATTACATATATGAAAATACTGAAAGTTTAAATGCTGATAC GACTTGGCCGATTAATTACCAACGATTAGTTCTTTTACCATGGCAGCAAATTCAAGAGCTAAAAAAATATGGTTTTAGCT TCAAAAATAATCACATCTACTGGCCGGATGGTTCATCATCACCATATAAGCAAATTCAATCTAGCAATCAAACAATCAAA CAATTGTAA
Upstream 100 bases:
>100_bases ATTAAAGGTATTAGAAAAAATAATATCAAAAAATATAGACCTAAAAAATGAAACATATTCAAATTTAGAAATTTCCATAT TAAGCGATTATGAATCCTAT
Downstream 100 bases:
>100_bases ATATACTTCCAAACGAGACCTTAGTTAAGATCACATCTCTTTTATCACCTATATTTCAAGTTAGTTATATCGATAAAGGT CCTAAGATAGAATGGGAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MIASDSSYLDLSDNFTDLGFSIINNQESIDTNIINTYINGLEKILCSTPILSNDDKYKNVACWYIHFVQGLVVKEEKYSY LLKSICYIVNSIESRRTDNYKPLLTGRIYMNFTYITTWPSGLGKALIEHFNQLTDICIDSDNKDSIVNLYSELISSLGFG IITTNELIYYFNDYKVNNHEYSKLIELSNYIEETLNNESLTFDYKKIKEIAPASFTQKKGDDDDILKSFENKINDYNFQK MAFKNIHIFISKISKYDTGLLIDICELKNPMSSEINMLTCELLPNSIQDIFNSLISLDRDDLLMSRTGEMHNQYLIKGLS MLFIYKVCVLVKDDSSTINLDFMSKYKLSDLDKINNLLKSISDITSHLVNHQKINDLCLLHSLAMDKVKDKRIEIIEIIE IISNGINKNIDELKSSGKLSHEKINTFLNSFPKDKNVIENHEPLLKKLLISKNAKFKHTSSFKRTTFIDDPRVHTIFDNI GQSVINGHFDLIYNYIYENTESLNADTTWPINYQRLVLLPWQQIQELKKYGFSFKNNHIYWPDGSSSPYKQIQSSNQTIK QL
Sequences:
>Translated_562_residues MIASDSSYLDLSDNFTDLGFSIINNQESIDTNIINTYINGLEKILCSTPILSNDDKYKNVACWYIHFVQGLVVKEEKYSY LLKSICYIVNSIESRRTDNYKPLLTGRIYMNFTYITTWPSGLGKALIEHFNQLTDICIDSDNKDSIVNLYSELISSLGFG IITTNELIYYFNDYKVNNHEYSKLIELSNYIEETLNNESLTFDYKKIKEIAPASFTQKKGDDDDILKSFENKINDYNFQK MAFKNIHIFISKISKYDTGLLIDICELKNPMSSEINMLTCELLPNSIQDIFNSLISLDRDDLLMSRTGEMHNQYLIKGLS MLFIYKVCVLVKDDSSTINLDFMSKYKLSDLDKINNLLKSISDITSHLVNHQKINDLCLLHSLAMDKVKDKRIEIIEIIE IISNGINKNIDELKSSGKLSHEKINTFLNSFPKDKNVIENHEPLLKKLLISKNAKFKHTSSFKRTTFIDDPRVHTIFDNI GQSVINGHFDLIYNYIYENTESLNADTTWPINYQRLVLLPWQQIQELKKYGFSFKNNHIYWPDGSSSPYKQIQSSNQTIK QL >Mature_562_residues MIASDSSYLDLSDNFTDLGFSIINNQESIDTNIINTYINGLEKILCSTPILSNDDKYKNVACWYIHFVQGLVVKEEKYSY LLKSICYIVNSIESRRTDNYKPLLTGRIYMNFTYITTWPSGLGKALIEHFNQLTDICIDSDNKDSIVNLYSELISSLGFG IITTNELIYYFNDYKVNNHEYSKLIELSNYIEETLNNESLTFDYKKIKEIAPASFTQKKGDDDDILKSFENKINDYNFQK MAFKNIHIFISKISKYDTGLLIDICELKNPMSSEINMLTCELLPNSIQDIFNSLISLDRDDLLMSRTGEMHNQYLIKGLS MLFIYKVCVLVKDDSSTINLDFMSKYKLSDLDKINNLLKSISDITSHLVNHQKINDLCLLHSLAMDKVKDKRIEIIEIIE IISNGINKNIDELKSSGKLSHEKINTFLNSFPKDKNVIENHEPLLKKLLISKNAKFKHTSSFKRTTFIDDPRVHTIFDNI GQSVINGHFDLIYNYIYENTESLNADTTWPINYQRLVLLPWQQIQELKKYGFSFKNNHIYWPDGSSSPYKQIQSSNQTIK QL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65085; Mature: 65085
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIASDSSYLDLSDNFTDLGFSIINNQESIDTNIINTYINGLEKILCSTPILSNDDKYKNV CCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH ACWYIHFVQGLVVKEEKYSYLLKSICYIVNSIESRRTDNYKPLLTGRIYMNFTYITTWPS HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCC GLGKALIEHFNQLTDICIDSDNKDSIVNLYSELISSLGFGIITTNELIYYFNDYKVNNHE HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCEEEEEECEEECCHH YSKLIELSNYIEETLNNESLTFDYKKIKEIAPASFTQKKGDDDDILKSFENKINDYNFQK HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCHHH MAFKNIHIFISKISKYDTGLLIDICELKNPMSSEINMLTCELLPNSIQDIFNSLISLDRD HHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCCCEEEHHHCCHHHHHHHHHHHHCCHH DLLMSRTGEMHNQYLIKGLSMLFIYKVCVLVKDDSSTINLDFMSKYKLSDLDKINNLLKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHHH ISDITSHLVNHQKINDLCLLHSLAMDKVKDKRIEIIEIIEIISNGINKNIDELKSSGKLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCH HEKINTFLNSFPKDKNVIENHEPLLKKLLISKNAKFKHTSSFKRTTFIDDPRVHTIFDNI HHHHHHHHHCCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH GQSVINGHFDLIYNYIYENTESLNADTTWPINYQRLVLLPWQQIQELKKYGFSFKNNHIY HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEEE WPDGSSSPYKQIQSSNQTIKQL CCCCCCCHHHHHHCCCHHHHCC >Mature Secondary Structure MIASDSSYLDLSDNFTDLGFSIINNQESIDTNIINTYINGLEKILCSTPILSNDDKYKNV CCCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH ACWYIHFVQGLVVKEEKYSYLLKSICYIVNSIESRRTDNYKPLLTGRIYMNFTYITTWPS HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCC GLGKALIEHFNQLTDICIDSDNKDSIVNLYSELISSLGFGIITTNELIYYFNDYKVNNHE HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCEEEEEECEEECCHH YSKLIELSNYIEETLNNESLTFDYKKIKEIAPASFTQKKGDDDDILKSFENKINDYNFQK HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCHHH MAFKNIHIFISKISKYDTGLLIDICELKNPMSSEINMLTCELLPNSIQDIFNSLISLDRD HHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCCCEEEHHHCCHHHHHHHHHHHHCCHH DLLMSRTGEMHNQYLIKGLSMLFIYKVCVLVKDDSSTINLDFMSKYKLSDLDKINNLLKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHHHHH ISDITSHLVNHQKINDLCLLHSLAMDKVKDKRIEIIEIIEIISNGINKNIDELKSSGKLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCH HEKINTFLNSFPKDKNVIENHEPLLKKLLISKNAKFKHTSSFKRTTFIDDPRVHTIFDNI HHHHHHHHHCCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH GQSVINGHFDLIYNYIYENTESLNADTTWPINYQRLVLLPWQQIQELKKYGFSFKNNHIY HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEEE WPDGSSSPYKQIQSSNQTIKQL CCCCCCCHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA