Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695167
Identifier: 209695167
GI number: 209695167
Start: 1766058
End: 1766405
Strand: Direct
Name: 209695167
Synonym: VSAL_I1671
Alternate gene names: NA
Gene position: 1766058-1766405 (Clockwise)
Preceding gene: 209695166
Following gene: 209695168
Centisome position: 53.11
GC content: 36.21
Gene sequence:
>348_bases ATGAATGTATTTACTGATGTTTCCACCATTTATCTTCATCGTGATTTTGTCGATTTTCGCAAGGCCATTAATGGCCTTGT CGTGATTGTTGAGCAAGAAATGCAACTATCACCGTTTAGTGATGCTCTATTTATATTTTGCAATAAGCCTCGTGATAAAC TCAAAATATTGTATTGGGATAAAACAGGATTCGCTTTATGGTACAAGCGATTAGATGAAGACCGCTTCAAATGGCCACGA AATATAAATAACGATACGTTAGCATTATCAGAGCAGCAACTGACACTGCTATTACAAGGTTTTGATATCTTAGGACATCA ACCGGTACATTATCAAACAACCCTTTAA
Upstream 100 bases:
>100_bases CACAATTACCAGATATTCAACTTTCTATCGGAAAATTGCGATTAACATTGCCAGCTACTGAACCTCACTGGATAGGACTC TTATTAAAAGGGTATCAATC
Downstream 100 bases:
>100_bases ATAGTTGATTCTCAGTCAAGAATAGGAGGCAACCGATTGATTACCTGTATTATCGTTATATAGTCATCTACATGACTGAT AAAATAAAACCACTTCCTGA
Product: transposase
Products: NA
Alternate protein names: Transposase; IS66 Orf2 Like; Transposase ORF_A; Orphan Protein; Transposase Orf2 For Insertion Sequence Element; Transposase And Inactivated Derivatives; Transposase Family Protein; Tpn3 Protein; IS66 Family Element Orf2 Protein; Transposase-Like Protein; Transposase Truncated; IS66 Family Transposase; Transposase Protein
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MNVFTDVSTIYLHRDFVDFRKAINGLVVIVEQEMQLSPFSDALFIFCNKPRDKLKILYWDKTGFALWYKRLDEDRFKWPR NINNDTLALSEQQLTLLLQGFDILGHQPVHYQTTL
Sequences:
>Translated_115_residues MNVFTDVSTIYLHRDFVDFRKAINGLVVIVEQEMQLSPFSDALFIFCNKPRDKLKILYWDKTGFALWYKRLDEDRFKWPR NINNDTLALSEQQLTLLLQGFDILGHQPVHYQTTL >Mature_115_residues MNVFTDVSTIYLHRDFVDFRKAINGLVVIVEQEMQLSPFSDALFIFCNKPRDKLKILYWDKTGFALWYKRLDEDRFKWPR NINNDTLALSEQQLTLLLQGFDILGHQPVHYQTTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13668; Mature: 13668
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVFTDVSTIYLHRDFVDFRKAINGLVVIVEQEMQLSPFSDALFIFCNKPRDKLKILYWD CCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEC KTGFALWYKRLDEDRFKWPRNINNDTLALSEQQLTLLLQGFDILGHQPVHYQTTL CCCHHHHHHHCCCCCCCCCCCCCCCEEEECHHHEEEEEECCHHCCCCCEEEEECC >Mature Secondary Structure MNVFTDVSTIYLHRDFVDFRKAINGLVVIVEQEMQLSPFSDALFIFCNKPRDKLKILYWD CCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEC KTGFALWYKRLDEDRFKWPRNINNDTLALSEQQLTLLLQGFDILGHQPVHYQTTL CCCHHHHHHHCCCCCCCCCCCCCCCEEEECHHHEEEEEECCHHCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA