Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695166
Identifier: 209695166
GI number: 209695166
Start: 1765750
End: 1766061
Strand: Direct
Name: 209695166
Synonym: VSAL_I1670
Alternate gene names: NA
Gene position: 1765750-1766061 (Clockwise)
Preceding gene: 209695165
Following gene: 209695167
Centisome position: 53.1
GC content: 37.82
Gene sequence:
>312_bases ATGCAAAAAGATAAAAAGAGAACACCAGAGCAATGGCACGCTCTATTTGAATCTCAGCAATCTAGCAAGCTTAGTGCCGC TGAATTTTGTAGTAACCATAATATTCTGCCAAAGACATTTAGTGCACGTAAAGCACGATGGAAACAAAAGATTAACGCTT CTACTTTCTTGAAAGTAGAAGCGTTAACATCAACTATCATCGCCACTCCACAATTACCAGATATTCAACTTTCTATCGGA AAATTGCGATTAACATTGCCAGCTACTGAACCTCACTGGATAGGACTCTTATTAAAAGGGTATCAATCATGA
Upstream 100 bases:
>100_bases TCCCCACCACAAAAACGCCGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTT CATTTAACGAGAACGTAATT
Downstream 100 bases:
>100_bases ATGTATTTACTGATGTTTCCACCATTTATCTTCATCGTGATTTTGTCGATTTTCGCAAGGCCATTAATGGCCTTGTCGTG ATTGTTGAGCAAGAAATGCA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 103; Mature: 103
Protein sequence:
>103_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCSNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPATEPHWIGLLLKGYQS
Sequences:
>Translated_103_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCSNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPATEPHWIGLLLKGYQS >Mature_103_residues MQKDKKRTPEQWHALFESQQSSKLSAAEFCSNHNILPKTFSARKARWKQKINASTFLKVEALTSTIIATPQLPDIQLSIG KLRLTLPATEPHWIGLLLKGYQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11688; Mature: 11688
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCSNHNILPKTFSARKARWKQKINASTFLKVE CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEHH ALTSTIIATPQLPDIQLSIGKLRLTLPATEPHWIGLLLKGYQS HHHHHHCCCCCCCCEEEEECEEEEEECCCCCHHHHHEEECCCC >Mature Secondary Structure MQKDKKRTPEQWHALFESQQSSKLSAAEFCSNHNILPKTFSARKARWKQKINASTFLKVE CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEHH ALTSTIIATPQLPDIQLSIGKLRLTLPATEPHWIGLLLKGYQS HHHHHHCCCCCCCCEEEEECEEEEEECCCCCHHHHHEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA