Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695168
Identifier: 209695168
GI number: 209695168
Start: 1766477
End: 1767964
Strand: Direct
Name: 209695168
Synonym: VSAL_I1672
Alternate gene names: NA
Gene position: 1766477-1767964 (Clockwise)
Preceding gene: 209695167
Following gene: 209695170
Centisome position: 53.12
GC content: 39.65
Gene sequence:
>1488_bases ATGACTGATAAAATAAAACCACTTCCTGATACCATTGACGAGCTGAAAGCACTTGTGCTTCAGCTTGAAAATAAATATAA CCGTCTTCTAGAGCAATTTCGACTGGCTCAACATCAGCGCTTTGGTAAAAGCAGTGAATCTGACTCGACTCAATTTGATT TATTCAATGAAACAGAAGAAGAAATCATCATTGAAAATGATGACACACAAACGATTACCTACACTCGTCAAAAGCCAAAA CGCCAACGCTTACCTGAAGACTTACCGCGTACTGTTATTATCCACGACATAAAAGATAAAACTTGTAAGTGTTGCGGTCT AGAGATGCATGCGATGGGTAAAGACATCAGTGAAAAGTTGGAATTTGTACCAGCTAAAGTGGAAGTTATTCAACATGTTC GTCCTAAATATGCTTGCCGAAATTGTGAAAAAAACAATACTTCAGTAGACATTAAACAAGCCCCAATGCCAGCGTCACCA ATCCCTAAAGGGATTGCGACCGCAAGTTTACTTGCTCAAATTATTACGGCTAAATTTCAATACAGTCTTCCACTTTATCG TCAAGAAACGTTATTTCAGCAATGGGGTATCATTATTGGACGGCGAACGATGGCGGATTGGTTAATAAAATGCTCGGTAC TATTTACCCCTCTTAATAACGAGTTACATCGTATTTTGCTTGAACAACCCACTCTGCATTGTGATGAAACAACGGTAAAT GTGTTGGATGTTGAAAAAGCAAAATGTTATATGTGGGTCTACTGCTCTGGCTATGATTCTCCAGGCTCTGGTGTTTTGCC TGGAATTGTACTTTATGATTATCAATCTAGCAGGCATGGCTACCATCCAGTTAACTTTTTAAAAGGTTATAACGGGTATT TACATACCGATGGTTACCAAGGTTATGAACAAACTGAAGCGATTTTAGTTGGCTGTTGGGCACACGCACGTCGACGATTT ATTGAGGCTCAACGTGTTCAAGTAAAAGGGAAAACAGGGAGTGCAGATTGGGTATTGAGTAAAATCCAAAAGCTATACCG GATCGAATCGTTATTAAAAGAGGCTTCCCCTGAAGCCAAGTATGTTGCTAGGCAGACAGAAGCCCGCGATTTACTTAAAG AGCTCCGTGATTGGCTTGATAGCGCAGTTAGTCGAGTATCACCTAAAACAAAATTAGGTGAGGCGATTAGCTATACATTA AATCAATGGGATAAATTAGTTCGTTATATTGATGATGGATTGTTATCTATTGATAACAATCGAGCAGAGCGAGCGGTTAA ACCGTTTGTTATCGGCCGGAAAAACTGGTTATTTTCGGGTTCAACGGCTGGTGCAGATTCAAGTGCAATGCTTTACAGCA TTGTAGAAACAGCAAAGGCAAACGGATTAATCCCTTACGATTATATTAGGTATTGTCTAGATCGTTTATGTGTTGGATCG CCAGATATCGATTCACTTTTACCTTGGAATGTAAAAGACAAGGTGTAG
Upstream 100 bases:
>100_bases AACCGGTACATTATCAAACAACCCTTTAAATAGTTGATTCTCAGTCAAGAATAGGAGGCAACCGATTGATTACCTGTATT ATCGTTATATAGTCATCTAC
Downstream 100 bases:
>100_bases TTCCCCGCACGCTTACAAAACGCCCACACTTAGTAGTCCTATTGTTTACTTGGAGATTTAGGCATCTTGATGATAATACT GCCAAAGAAATAACGAGCCG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MTDKIKPLPDTIDELKALVLQLENKYNRLLEQFRLAQHQRFGKSSESDSTQFDLFNETEEEIIIENDDTQTITYTRQKPK RQRLPEDLPRTVIIHDIKDKTCKCCGLEMHAMGKDISEKLEFVPAKVEVIQHVRPKYACRNCEKNNTSVDIKQAPMPASP IPKGIATASLLAQIITAKFQYSLPLYRQETLFQQWGIIIGRRTMADWLIKCSVLFTPLNNELHRILLEQPTLHCDETTVN VLDVEKAKCYMWVYCSGYDSPGSGVLPGIVLYDYQSSRHGYHPVNFLKGYNGYLHTDGYQGYEQTEAILVGCWAHARRRF IEAQRVQVKGKTGSADWVLSKIQKLYRIESLLKEASPEAKYVARQTEARDLLKELRDWLDSAVSRVSPKTKLGEAISYTL NQWDKLVRYIDDGLLSIDNNRAERAVKPFVIGRKNWLFSGSTAGADSSAMLYSIVETAKANGLIPYDYIRYCLDRLCVGS PDIDSLLPWNVKDKV
Sequences:
>Translated_495_residues MTDKIKPLPDTIDELKALVLQLENKYNRLLEQFRLAQHQRFGKSSESDSTQFDLFNETEEEIIIENDDTQTITYTRQKPK RQRLPEDLPRTVIIHDIKDKTCKCCGLEMHAMGKDISEKLEFVPAKVEVIQHVRPKYACRNCEKNNTSVDIKQAPMPASP IPKGIATASLLAQIITAKFQYSLPLYRQETLFQQWGIIIGRRTMADWLIKCSVLFTPLNNELHRILLEQPTLHCDETTVN VLDVEKAKCYMWVYCSGYDSPGSGVLPGIVLYDYQSSRHGYHPVNFLKGYNGYLHTDGYQGYEQTEAILVGCWAHARRRF IEAQRVQVKGKTGSADWVLSKIQKLYRIESLLKEASPEAKYVARQTEARDLLKELRDWLDSAVSRVSPKTKLGEAISYTL NQWDKLVRYIDDGLLSIDNNRAERAVKPFVIGRKNWLFSGSTAGADSSAMLYSIVETAKANGLIPYDYIRYCLDRLCVGS PDIDSLLPWNVKDKV >Mature_494_residues TDKIKPLPDTIDELKALVLQLENKYNRLLEQFRLAQHQRFGKSSESDSTQFDLFNETEEEIIIENDDTQTITYTRQKPKR QRLPEDLPRTVIIHDIKDKTCKCCGLEMHAMGKDISEKLEFVPAKVEVIQHVRPKYACRNCEKNNTSVDIKQAPMPASPI PKGIATASLLAQIITAKFQYSLPLYRQETLFQQWGIIIGRRTMADWLIKCSVLFTPLNNELHRILLEQPTLHCDETTVNV LDVEKAKCYMWVYCSGYDSPGSGVLPGIVLYDYQSSRHGYHPVNFLKGYNGYLHTDGYQGYEQTEAILVGCWAHARRRFI EAQRVQVKGKTGSADWVLSKIQKLYRIESLLKEASPEAKYVARQTEARDLLKELRDWLDSAVSRVSPKTKLGEAISYTLN QWDKLVRYIDDGLLSIDNNRAERAVKPFVIGRKNWLFSGSTAGADSSAMLYSIVETAKANGLIPYDYIRYCLDRLCVGSP DIDSLLPWNVKDKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 25 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004291 [H]
Pfam domain/function: PF03050 Transposase_25 [H]
EC number: NA
Molecular weight: Translated: 56613; Mature: 56482
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKIKPLPDTIDELKALVLQLENKYNRLLEQFRLAQHQRFGKSSESDSTQFDLFNETEE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC EIIIENDDTQTITYTRQKPKRQRLPEDLPRTVIIHDIKDKTCKCCGLEMHAMGKDISEKL CEEEECCCCCEEEEECCCCHHHCCCHHCCCEEEEECCCCCCHHHCCCCHHHHCCCHHHHH EFVPAKVEVIQHVRPKYACRNCEKNNTSVDIKQAPMPASPIPKGIATASLLAQIITAKFQ HHCHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH YSLPLYRQETLFQQWGIIIGRRTMADWLIKCSVLFTPLNNELHRILLEQPTLHCDETTVN HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCEEE VLDVEKAKCYMWVYCSGYDSPGSGVLPGIVLYDYQSSRHGYHPVNFLKGYNGYLHTDGYQ EEEECCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCEECCCCC GYEQTEAILVGCWAHARRRFIEAQRVQVKGKTGSADWVLSKIQKLYRIESLLKEASPEAK CHHHHHHHEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH YVARQTEARDLLKELRDWLDSAVSRVSPKTKLGEAISYTLNQWDKLVRYIDDGLLSIDNN HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC RAERAVKPFVIGRKNWLFSGSTAGADSSAMLYSIVETAKANGLIPYDYIRYCLDRLCVGS HHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC PDIDSLLPWNVKDKV CCCCCCCCCCCCCCC >Mature Secondary Structure TDKIKPLPDTIDELKALVLQLENKYNRLLEQFRLAQHQRFGKSSESDSTQFDLFNETEE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC EIIIENDDTQTITYTRQKPKRQRLPEDLPRTVIIHDIKDKTCKCCGLEMHAMGKDISEKL CEEEECCCCCEEEEECCCCHHHCCCHHCCCEEEEECCCCCCHHHCCCCHHHHCCCHHHHH EFVPAKVEVIQHVRPKYACRNCEKNNTSVDIKQAPMPASPIPKGIATASLLAQIITAKFQ HHCHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH YSLPLYRQETLFQQWGIIIGRRTMADWLIKCSVLFTPLNNELHRILLEQPTLHCDETTVN HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCEEE VLDVEKAKCYMWVYCSGYDSPGSGVLPGIVLYDYQSSRHGYHPVNFLKGYNGYLHTDGYQ EEEECCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCEECCCCC GYEQTEAILVGCWAHARRRFIEAQRVQVKGKTGSADWVLSKIQKLYRIESLLKEASPEAK CHHHHHHHEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH YVARQTEARDLLKELRDWLDSAVSRVSPKTKLGEAISYTLNQWDKLVRYIDDGLLSIDNN HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC RAERAVKPFVIGRKNWLFSGSTAGADSSAMLYSIVETAKANGLIPYDYIRYCLDRLCVGS HHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC PDIDSLLPWNVKDKV CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]