Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695050

Identifier: 209695050

GI number: 209695050

Start: 1649358

End: 1650140

Strand: Direct

Name: 209695050

Synonym: VSAL_I1545

Alternate gene names: NA

Gene position: 1649358-1650140 (Clockwise)

Preceding gene: 209695049

Following gene: 209695051

Centisome position: 49.6

GC content: 29.63

Gene sequence:

>783_bases
ATGGCTTCTGTTTTTTTATACGTAAAATTCAAGCAGATACCCATTTTTTCATCTAGGATTAATAGAGAGAATAATAAAAG
AGAAAAAAGTAGATTTAGATTTAATGGGAGTAAAGTTATGAAGCCAATAATATTGTTAATTCTGTTGCTTTTTATTAACC
CATTCACATCAAGTGCAACGGTGGAATTAAAAAATAGGAATATTACCCATTTTGAAAATCCTTTTCTTCTTGGTGATTGG
TATTTTTTTAAACCAAAAGATGCAGAGAGTGATTATGATGTTCTTCATATTTCGTTGAGTTCAAATCATGATTTTTTTAT
AGAGATGATTGAAATGGAATCAAATTCAGCAGATGTGTGGAGAGGCGAATTTTCTTTGTCTCAAGAACACATTCGTTTTG
AAGGTGATGAAGAAGAGCCACAAGTTTATCATTATCAAGTTAGTCATAATCGTCTTTATTTAAATGGTATTGAATTTTTC
AAAGTTGTTCCTGAAAATTTTATTGGTTCTTGGAGTTCAAAATTAGTCTCTGGTGAAGATATTATGGCAAGTAATGTTAA
AGCATTAAATCTGAAGTTACGTTCAGATTTTATTTTTTCATTAGAGGTTGTTTCTACAACGGGTAAAAAAAATCAGCAGG
TTGGTTATTATTATTTTGAAGATGATGATTTAGTTTTGCTTTATGAGGAAGGGGAGCAAGAGTCAACATTTACAATTAAA
GAAGATGTATTAGAATTGAAAAATGAACAGTTTGGAATGTACGCATTATTGCAAAGAGAATAA

Upstream 100 bases:

>100_bases
TTACCATTGATTTGGCAACAATGGAACGTTAATACTTAAGAAGATTGTTATTCTTGATGTGAACGTTTTCATTATCGTTA
TTTAAAAACAGAAGCTATTT

Downstream 100 bases:

>100_bases
TGAGCCTATAAGGATAGAAATATGAGCCGAGACCACTTTTAATTTACAACCTGGCCATATCTTGTGAGAAAATAGCTGAG
TTAATTAGTAACTATCACTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDW
YFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFF
KVVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK
EDVLELKNEQFGMYALLQRE

Sequences:

>Translated_260_residues
MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDW
YFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFF
KVVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK
EDVLELKNEQFGMYALLQRE
>Mature_259_residues
ASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDWY
FFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFK
VVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIKE
DVLELKNEQFGMYALLQRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30580; Mature: 30449

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSAT
CCEEEEEEEEEECEEEHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCCCEE
VELKNRNITHFENPFLLGDWYFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVW
EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEE
RGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFKVVPENFIGSWSSKLVSGED
ECCCCCCCCEEEECCCCCCCEEEEEEEECCEEEEECEEEEEECCHHHCCCHHHHEECCCC
IMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK
HHHCCEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCEEEHH
EDVLELKNEQFGMYALLQRE
HHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
ASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSAT
CEEEEEEEEEECEEEHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCCCEE
VELKNRNITHFENPFLLGDWYFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVW
EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEE
RGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFKVVPENFIGSWSSKLVSGED
ECCCCCCCCEEEECCCCCCCEEEEEEEECCEEEEECEEEEEECCHHHCCCHHHHEECCCC
IMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK
HHHCCEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCEEEHH
EDVLELKNEQFGMYALLQRE
HHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA