Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695050
Identifier: 209695050
GI number: 209695050
Start: 1649358
End: 1650140
Strand: Direct
Name: 209695050
Synonym: VSAL_I1545
Alternate gene names: NA
Gene position: 1649358-1650140 (Clockwise)
Preceding gene: 209695049
Following gene: 209695051
Centisome position: 49.6
GC content: 29.63
Gene sequence:
>783_bases ATGGCTTCTGTTTTTTTATACGTAAAATTCAAGCAGATACCCATTTTTTCATCTAGGATTAATAGAGAGAATAATAAAAG AGAAAAAAGTAGATTTAGATTTAATGGGAGTAAAGTTATGAAGCCAATAATATTGTTAATTCTGTTGCTTTTTATTAACC CATTCACATCAAGTGCAACGGTGGAATTAAAAAATAGGAATATTACCCATTTTGAAAATCCTTTTCTTCTTGGTGATTGG TATTTTTTTAAACCAAAAGATGCAGAGAGTGATTATGATGTTCTTCATATTTCGTTGAGTTCAAATCATGATTTTTTTAT AGAGATGATTGAAATGGAATCAAATTCAGCAGATGTGTGGAGAGGCGAATTTTCTTTGTCTCAAGAACACATTCGTTTTG AAGGTGATGAAGAAGAGCCACAAGTTTATCATTATCAAGTTAGTCATAATCGTCTTTATTTAAATGGTATTGAATTTTTC AAAGTTGTTCCTGAAAATTTTATTGGTTCTTGGAGTTCAAAATTAGTCTCTGGTGAAGATATTATGGCAAGTAATGTTAA AGCATTAAATCTGAAGTTACGTTCAGATTTTATTTTTTCATTAGAGGTTGTTTCTACAACGGGTAAAAAAAATCAGCAGG TTGGTTATTATTATTTTGAAGATGATGATTTAGTTTTGCTTTATGAGGAAGGGGAGCAAGAGTCAACATTTACAATTAAA GAAGATGTATTAGAATTGAAAAATGAACAGTTTGGAATGTACGCATTATTGCAAAGAGAATAA
Upstream 100 bases:
>100_bases TTACCATTGATTTGGCAACAATGGAACGTTAATACTTAAGAAGATTGTTATTCTTGATGTGAACGTTTTCATTATCGTTA TTTAAAAACAGAAGCTATTT
Downstream 100 bases:
>100_bases TGAGCCTATAAGGATAGAAATATGAGCCGAGACCACTTTTAATTTACAACCTGGCCATATCTTGTGAGAAAATAGCTGAG TTAATTAGTAACTATCACTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDW YFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFF KVVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK EDVLELKNEQFGMYALLQRE
Sequences:
>Translated_260_residues MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDW YFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFF KVVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK EDVLELKNEQFGMYALLQRE >Mature_259_residues ASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSATVELKNRNITHFENPFLLGDWY FFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVWRGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFK VVPENFIGSWSSKLVSGEDIMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIKE DVLELKNEQFGMYALLQRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30580; Mature: 30449
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSAT CCEEEEEEEEEECEEEHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCCCEE VELKNRNITHFENPFLLGDWYFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVW EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEE RGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFKVVPENFIGSWSSKLVSGED ECCCCCCCCEEEECCCCCCCEEEEEEEECCEEEEECEEEEEECCHHHCCCHHHHEECCCC IMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK HHHCCEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCEEEHH EDVLELKNEQFGMYALLQRE HHHHHHCCCCCCEEEEEECC >Mature Secondary Structure ASVFLYVKFKQIPIFSSRINRENNKREKSRFRFNGSKVMKPIILLILLLFINPFTSSAT CEEEEEEEEEECEEEHHHCCCCCCHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCCCEE VELKNRNITHFENPFLLGDWYFFKPKDAESDYDVLHISLSSNHDFFIEMIEMESNSADVW EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCEE RGEFSLSQEHIRFEGDEEEPQVYHYQVSHNRLYLNGIEFFKVVPENFIGSWSSKLVSGED ECCCCCCCCEEEECCCCCCCEEEEEEEECCEEEEECEEEEEECCHHHCCCHHHHEECCCC IMASNVKALNLKLRSDFIFSLEVVSTTGKKNQQVGYYYFEDDDLVLLYEEGEQESTFTIK HHHCCEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCEEEHH EDVLELKNEQFGMYALLQRE HHHHHHCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA