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The map label for this gene is ydjX [C]

Identifier: 209695035

GI number: 209695035

Start: 1631245

End: 1631928

Strand: Direct

Name: ydjX [C]

Synonym: VSAL_I1530

Alternate gene names: 209695035

Gene position: 1631245-1631928 (Clockwise)

Preceding gene: 209695034

Following gene: 209695036

Centisome position: 49.06

GC content: 34.8

Gene sequence:

>684_bases
ATGAATAAAAAAAGACTCTTATTACTTGTTCTTCTTGCCTCTTTCGCCTTTGTTTATTTTAAATTTGGTGATCTTTTAAC
ATTAGAACAAGTGAAAGAATTTCATCTCAATCTGCAAAATGATGTGAAAGAAAACTTGTTTTTATACAGCGGCATGTACT
TTATTGCGTACATTGTTATTACTGCTTTATCTATTCCTGGTGCGGCGGTTGTTACATTATTAGGAGCAGCATTATTTGGC
TTCTGGTGGAGTTTATTGCTTGTGTCGTTTTCAAGTTCGATAGGCGCAACAATTGCTTTTTTAAGCAGCCGTTATTTACT
GAGAGAGTGGGTAGATAACAAATTTAAAGATAAGCTTATACCAATTAATCAAGGCGTAGAAAAAGACGGTGCTTTTTATT
TACTGACTTTACGGTTAATTCCTATCTTTCCGTTCTTTTTAATTAATCTACTTATGGGCCTAACAAAGCTAAGCGCAGGA
CGCTTTTATCTCTTTAGCCAGATAGGTATGTTACCCGGAACCATGGTTTATTTGAATGCAGGGACTCAGTTATCAGAGAT
AAACTCGCTGTCAGGTTTAATTTCTCCTCAAATTTTAGGTTCATTGGCTTTGCTTGGTTTATTTCCTATAGTAATTAAGT
TCTTAATGGGAAAACTACAAAAAAACCGTACACAAGAGGGATAA

Upstream 100 bases:

>100_bases
CGTTACTGTGCCACAAATTTGGTTGGACGGTAAATACATTGGTGGATTTGATAATCTTGAAAAATCGATGACAATGACTG
ATTAAAGAGAGGTACTCATT

Downstream 100 bases:

>100_bases
TAATAATTGGATCAAGATCATTATTATTATCTAATTAAGCATTTTTAGTATAAAATTGACGCTGCCATGATACATTGTTG
CTCTTAAACTGTTAAGATGC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNKKRLLLLVLLASFAFVYFKFGDLLTLEQVKEFHLNLQNDVKENLFLYSGMYFIAYIVITALSIPGAAVVTLLGAALFG
FWWSLLLVSFSSSIGATIAFLSSRYLLREWVDNKFKDKLIPINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKLSAG
RFYLFSQIGMLPGTMVYLNAGTQLSEINSLSGLISPQILGSLALLGLFPIVIKFLMGKLQKNRTQEG

Sequences:

>Translated_227_residues
MNKKRLLLLVLLASFAFVYFKFGDLLTLEQVKEFHLNLQNDVKENLFLYSGMYFIAYIVITALSIPGAAVVTLLGAALFG
FWWSLLLVSFSSSIGATIAFLSSRYLLREWVDNKFKDKLIPINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKLSAG
RFYLFSQIGMLPGTMVYLNAGTQLSEINSLSGLISPQILGSLALLGLFPIVIKFLMGKLQKNRTQEG
>Mature_227_residues
MNKKRLLLLVLLASFAFVYFKFGDLLTLEQVKEFHLNLQNDVKENLFLYSGMYFIAYIVITALSIPGAAVVTLLGAALFG
FWWSLLLVSFSSSIGATIAFLSSRYLLREWVDNKFKDKLIPINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKLSAG
RFYLFSQIGMLPGTMVYLNAGTQLSEINSLSGLISPQILGSLALLGLFPIVIKFLMGKLQKNRTQEG

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI18087813, Length=210, Percent_Identity=30, Blast_Score=71, Evalue=9e-13,
Organism=Escherichia coli, GI87081964, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17532687, Length=229, Percent_Identity=27.5109170305677, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI18859941, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25410; Mature: 25410

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKRLLLLVLLASFAFVYFKFGDLLTLEQVKEFHLNLQNDVKENLFLYSGMYFIAYIVI
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TALSIPGAAVVTLLGAALFGFWWSLLLVSFSSSIGATIAFLSSRYLLREWVDNKFKDKLI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC
PINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKLSAGRFYLFSQIGMLPGTMVYLNA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC
GTQLSEINSLSGLISPQILGSLALLGLFPIVIKFLMGKLQKNRTQEG
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKKRLLLLVLLASFAFVYFKFGDLLTLEQVKEFHLNLQNDVKENLFLYSGMYFIAYIVI
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TALSIPGAAVVTLLGAALFGFWWSLLLVSFSSSIGATIAFLSSRYLLREWVDNKFKDKLI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC
PINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKLSAGRFYLFSQIGMLPGTMVYLNA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEC
GTQLSEINSLSGLISPQILGSLALLGLFPIVIKFLMGKLQKNRTQEG
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]