Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695005
Identifier: 209695005
GI number: 209695005
Start: 1606036
End: 1606524
Strand: Direct
Name: 209695005
Synonym: VSAL_I1497
Alternate gene names: NA
Gene position: 1606036-1606524 (Clockwise)
Preceding gene: 209695003
Following gene: 209695006
Centisome position: 48.3
GC content: 39.47
Gene sequence:
>489_bases ATGAGAAAACAGAGTTTTGGATTAATGCTAATTGCCTTGCTTGCTGGGTGTAGTTCTCATTTAAGCCCATTAGATTCGCC TATTTCTGCTTCAGATATTAAGGCGCAGACGTTCACCTATACCGAACTGAGTGATAAACAGAAGGTATTATGGGAAAAGG CTCGACGTCATATCATATCAACTTACGGAAAAAGTCAGCCAATTTTACGGGTTGAAAATGAATCGAATGGAACGCTACTT GGCAAAGGGCTTGTTCAATGGAAAAAATCATCTTCGTCCGACAGTACATATTGTTATTCTGAGTACGATATTCGATTTAT GACCAGAGATCATAAAGCACGTTTGCAGTTAACATTACTACCAGGTGTTCCCGCCAAATCTGAGTGTGATGATTGGGTTT TACCTTCTCAATATGGCTATGAGCAAATTCTTGATAAGTTCACTGTGATGTCTGATGATTTGGACTCTGTTTTACGTCGA ACTCAGTAG
Upstream 100 bases:
>100_bases AGAGATTCACGCTGCTCATGCGGTGGCACTTGCAATTGCTAATGATGTTTAACGTTATTTAATAATTGCGGTTCAACAGA CAGATTAAAATGGGTATTAA
Downstream 100 bases:
>100_bases TGGTGGTGGCGAGCTTCCGCTTACTGCTTAGATCTCAAGAATAACTGACTCACTATTTATTTTCCCATCATCGCTTTTTT GAGCCTCTTTCTTATCCTAG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR TQ
Sequences:
>Translated_162_residues MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR TQ >Mature_162_residues MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR TQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18402; Mature: 18402
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIIS CCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH TYGKSQPILRVENESNGTLLGKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLL HCCCCCCEEEEECCCCCEEEECHHHHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEE PGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRRTQ CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCC >Mature Secondary Structure MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIIS CCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH TYGKSQPILRVENESNGTLLGKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLL HCCCCCCEEEEECCCCCEEEECHHHHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEE PGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRRTQ CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA