Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695005

Identifier: 209695005

GI number: 209695005

Start: 1606036

End: 1606524

Strand: Direct

Name: 209695005

Synonym: VSAL_I1497

Alternate gene names: NA

Gene position: 1606036-1606524 (Clockwise)

Preceding gene: 209695003

Following gene: 209695006

Centisome position: 48.3

GC content: 39.47

Gene sequence:

>489_bases
ATGAGAAAACAGAGTTTTGGATTAATGCTAATTGCCTTGCTTGCTGGGTGTAGTTCTCATTTAAGCCCATTAGATTCGCC
TATTTCTGCTTCAGATATTAAGGCGCAGACGTTCACCTATACCGAACTGAGTGATAAACAGAAGGTATTATGGGAAAAGG
CTCGACGTCATATCATATCAACTTACGGAAAAAGTCAGCCAATTTTACGGGTTGAAAATGAATCGAATGGAACGCTACTT
GGCAAAGGGCTTGTTCAATGGAAAAAATCATCTTCGTCCGACAGTACATATTGTTATTCTGAGTACGATATTCGATTTAT
GACCAGAGATCATAAAGCACGTTTGCAGTTAACATTACTACCAGGTGTTCCCGCCAAATCTGAGTGTGATGATTGGGTTT
TACCTTCTCAATATGGCTATGAGCAAATTCTTGATAAGTTCACTGTGATGTCTGATGATTTGGACTCTGTTTTACGTCGA
ACTCAGTAG

Upstream 100 bases:

>100_bases
AGAGATTCACGCTGCTCATGCGGTGGCACTTGCAATTGCTAATGATGTTTAACGTTATTTAATAATTGCGGTTCAACAGA
CAGATTAAAATGGGTATTAA

Downstream 100 bases:

>100_bases
TGGTGGTGGCGAGCTTCCGCTTACTGCTTAGATCTCAAGAATAACTGACTCACTATTTATTTTCCCATCATCGCTTTTTT
GAGCCTCTTTCTTATCCTAG

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL
GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR
TQ

Sequences:

>Translated_162_residues
MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL
GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR
TQ
>Mature_162_residues
MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIISTYGKSQPILRVENESNGTLL
GKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLLPGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRR
TQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18402; Mature: 18402

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIIS
CCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
TYGKSQPILRVENESNGTLLGKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLL
HCCCCCCEEEEECCCCCEEEECHHHHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEE
PGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRRTQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MRKQSFGLMLIALLAGCSSHLSPLDSPISASDIKAQTFTYTELSDKQKVLWEKARRHIIS
CCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
TYGKSQPILRVENESNGTLLGKGLVQWKKSSSSDSTYCYSEYDIRFMTRDHKARLQLTLL
HCCCCCCEEEEECCCCCEEEECHHHHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEE
PGVPAKSECDDWVLPSQYGYEQILDKFTVMSDDLDSVLRRTQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA