Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694997
Identifier: 209694997
GI number: 209694997
Start: 1596738
End: 1597091
Strand: Direct
Name: 209694997
Synonym: VSAL_I1487
Alternate gene names: NA
Gene position: 1596738-1597091 (Clockwise)
Preceding gene: 209694996
Following gene: 209694998
Centisome position: 48.02
GC content: 45.76
Gene sequence:
>354_bases ATGAACAATAACCGAGAAATAATCGCGAGTTTGCGTGAGCGCATTCCAACGTTTGAATGTACGCCAGGGTGTCACGATTG CTGTGGGCCTGTGACGACGTCTTCGGAAGAAATGTCGCGTTTGCCAGTGAAAAGTGATGCAGAGCATGAGGCGGCATTAA ATGAATTTGATTGCGTTCATTTGGGGCCTAAGGGGTGTACTGTATACGAAGAAAGACCGTTAATATGCCGACTTTTTGGT ACAACACCAAACATGCCGTGTCCAAATAGCTGCCGACCGAAAGAGATGATTGATTCGAAAACCGAACGTCAGATCCATCA TTACATCGCAAATACACGACAAGTGTTGGTGTAA
Upstream 100 bases:
>100_bases TGGTAGATTTACATACTGCTAATTTAAATATCCTCCTCAACTTCCAGTGAATTAGGTATGGCGTTATAATAAAGGTGGAT TGAACAAAAGTTAGGTATGT
Downstream 100 bases:
>100_bases AAGACATTCCTATGTTTGTCGTCGTTAACGTATGTTCTCGTCATAACCAGTCATACTCTAGAATCAACATTATTGATTAC ACTCGGTCGTCTTTGATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 117
Protein sequence:
>117_residues MNNNREIIASLRERIPTFECTPGCHDCCGPVTTSSEEMSRLPVKSDAEHEAALNEFDCVHLGPKGCTVYEERPLICRLFG TTPNMPCPNSCRPKEMIDSKTERQIHHYIANTRQVLV
Sequences:
>Translated_117_residues MNNNREIIASLRERIPTFECTPGCHDCCGPVTTSSEEMSRLPVKSDAEHEAALNEFDCVHLGPKGCTVYEERPLICRLFG TTPNMPCPNSCRPKEMIDSKTERQIHHYIANTRQVLV >Mature_117_residues MNNNREIIASLRERIPTFECTPGCHDCCGPVTTSSEEMSRLPVKSDAEHEAALNEFDCVHLGPKGCTVYEERPLICRLFG TTPNMPCPNSCRPKEMIDSKTERQIHHYIANTRQVLV
Specific function: Unknown
COG id: COG0727
COG function: function code R; Predicted Fe-S-cluster oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13218; Mature: 13218
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 11.1 %Cys+Met (Translated Protein) 7.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 11.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNNREIIASLRERIPTFECTPGCHDCCGPVTTSSEEMSRLPVKSDAEHEAALNEFDCVH CCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCEEE LGPKGCTVYEERPLICRLFGTTPNMPCPNSCRPKEMIDSKTERQIHHYIANTRQVLV ECCCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNNNREIIASLRERIPTFECTPGCHDCCGPVTTSSEEMSRLPVKSDAEHEAALNEFDCVH CCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCEEE LGPKGCTVYEERPLICRLFGTTPNMPCPNSCRPKEMIDSKTERQIHHYIANTRQVLV ECCCCCEEECCCCEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA