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The map label for this gene is 209694996

Identifier: 209694996

GI number: 209694996

Start: 1596113

End: 1596643

Strand: Direct

Name: 209694996

Synonym: VSAL_I1486

Alternate gene names: NA

Gene position: 1596113-1596643 (Clockwise)

Preceding gene: 209694995

Following gene: 209694997

Centisome position: 48.0

GC content: 38.61

Gene sequence:

>531_bases
ATGGAAGGTCAAGTTGTTCGTTGGATTGATAATAAAGGGTTTGGTTTTATTCGGGGGAATGATCCCGATAATGATAATGA
AGTATTTGCTCATATTTCACAGTTTAAAAAAGGATACCGCAGGCCAAGGGTAGGTGATGAAGTTGTCTTTTTAATTGGTT
ATGAGGATGGTAAAAAAGTAGCCAACACCATTTCGTTGATAAACGTTAAACCTTTGAAGGTCACTAATGCGACAGCAGTA
AGGCTAAGCAAAGTGATTACCTTATTTTTTATTTTCACTCTATTTTTTCTTTATCTCTTTTTTATTACTTGGGAAGTCAC
TCCATTTTATTCACCACCTTCTTATGATGAATCGGAAGCGCCAATAAGAGTACGTCAAAACACGGGTTTTAGGTGTGAAG
GAAAAACCCGTTGTACTCAAATGAATTCATGCGATGAAGCGAAGTTCTACCTTCGTTATTGTCCAAACGTTAAGATCGAT
GGCGATGATGATGGAACGCCTTGTGAGCGACAGTTTTGTGGGGCGTGGTAG

Upstream 100 bases:

>100_bases
ATACTTCCCCTGATTCTTTATTGTTTGAAGTGATAATATTTCGGTTTTATTGCCTATTAAAGGGTTATGGAATATATACG
TTGTTGGGGAAGGTAGTGGT

Downstream 100 bases:

>100_bases
ATTTACATACTGCTAATTTAAATATCCTCCTCAACTTCCAGTGAATTAGGTATGGCGTTATAATAAAGGTGGATTGAACA
AAAGTTAGGTATGTATGAAC

Product: cold-shock protein

Products: NA

Alternate protein names: Cold-Shock Protein; Excalibur Domain Protein; Cold Shock Domain Family Protein; Cold Shock Family Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MEGQVVRWIDNKGFGFIRGNDPDNDNEVFAHISQFKKGYRRPRVGDEVVFLIGYEDGKKVANTISLINVKPLKVTNATAV
RLSKVITLFFIFTLFFLYLFFITWEVTPFYSPPSYDESEAPIRVRQNTGFRCEGKTRCTQMNSCDEAKFYLRYCPNVKID
GDDDGTPCERQFCGAW

Sequences:

>Translated_176_residues
MEGQVVRWIDNKGFGFIRGNDPDNDNEVFAHISQFKKGYRRPRVGDEVVFLIGYEDGKKVANTISLINVKPLKVTNATAV
RLSKVITLFFIFTLFFLYLFFITWEVTPFYSPPSYDESEAPIRVRQNTGFRCEGKTRCTQMNSCDEAKFYLRYCPNVKID
GDDDGTPCERQFCGAW
>Mature_176_residues
MEGQVVRWIDNKGFGFIRGNDPDNDNEVFAHISQFKKGYRRPRVGDEVVFLIGYEDGKKVANTISLINVKPLKVTNATAV
RLSKVITLFFIFTLFFLYLFFITWEVTPFYSPPSYDESEAPIRVRQNTGFRCEGKTRCTQMNSCDEAKFYLRYCPNVKID
GDDDGTPCERQFCGAW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20316; Mature: 20316

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGQVVRWIDNKGFGFIRGNDPDNDNEVFAHISQFKKGYRRPRVGDEVVFLIGYEDGKKV
CCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH
ANTISLINVKPLKVTNATAVRLSKVITLFFIFTLFFLYLFFITWEVTPFYSPPSYDESEA
HHEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PIRVRQNTGFRCEGKTRCTQMNSCDEAKFYLRYCPNVKIDGDDDGTPCERQFCGAW
CEEEECCCCEEECCCCCCCCCCCCCHHEEHEEECCCCEECCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MEGQVVRWIDNKGFGFIRGNDPDNDNEVFAHISQFKKGYRRPRVGDEVVFLIGYEDGKKV
CCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH
ANTISLINVKPLKVTNATAVRLSKVITLFFIFTLFFLYLFFITWEVTPFYSPPSYDESEA
HHEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PIRVRQNTGFRCEGKTRCTQMNSCDEAKFYLRYCPNVKIDGDDDGTPCERQFCGAW
CEEEECCCCEEECCCCCCCCCCCCCHHEEHEEECCCCEECCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA