| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is ygfF [H]
Identifier: 209694992
GI number: 209694992
Start: 1592965
End: 1593717
Strand: Direct
Name: ygfF [H]
Synonym: VSAL_I1482
Alternate gene names: 209694992
Gene position: 1592965-1593717 (Clockwise)
Preceding gene: 209694991
Following gene: 209694993
Centisome position: 47.91
GC content: 44.89
Gene sequence:
>753_bases ATGAGTACTCCAAAAGTGGCGGTTATTACCGGTGGTGGTCGAGGCATTGGTGCAGCAACCTCACTACTTTTTTCAAGAGA AGGTTATGCGGTGTGTATCAACTATAAATCGAACGCAGTCGCCGCGAATAAATTAGCTAAAACAATAATCGCAGAAGGCG GGAAGTGCATTACGGTTCAAGCGGATGTGTCTTGCGAAGAAGAGGTCACTCGACTATTTTCTACGGTTGATAGTGAATTA GGTACGCTATCTGTTCTTGTTAATAATGCTGGTATTTTGAAAACGCAATCACGCTTAGAAGACATGACGGCTGATCGGAT CAACGCCATACTTACAAATAATGTCACGAGCTATTTTTTATGTTGTAGAGAAGCGGTCAAGCGTATGTCTACTCGACATG GTGGTTTAGGTGGTGTGATTGTTAATGTGTCTTCTGGTGCCGCACGGTCGGGCTCTCCCAATGAGTATATCGATTATGCC GCGTCAAAAGGTGCGATTGATACTTTAACGAAAGGGTTGTCTTTGGAAGTTGCAGCAGAAGGCATTCGAGTTAATTGTGT TCGCCCGGGGTTAATTCATACCGATATGCATGCCGATGGCGGAGAGCCAGAGCGAATAGCAAGGTTGAAGAGTGTGATTC CGCTACAAAGAGGGGGTGAACCAGAAGAAGTTGCCGAAGCCATTTATTGGTTAGCCTCAGAGAAATCGTCATTTTCTACA GGGAATTACTTAGATTTAGCTGGCGGCTTGTAA
Upstream 100 bases:
>100_bases ATTTAATATGGAAGACAATGGCGTTGTTCGTTATACGTTGTCAGTTAATAGATAATGTTCTTGCTAACATTACGTACATT CAGAATATAAGGACAGATTG
Downstream 100 bases:
>100_bases AATACCCACATCAATCACTGGAACTTATTACGCTCGGTACCTTTAGGGACGAGCGTTTTTGTTTTAAATAGATTGATGAT CGTTTTATATCATATCGACA
Product: glucose 1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSTPKVAVITGGGRGIGAATSLLFSREGYAVCINYKSNAVAANKLAKTIIAEGGKCITVQADVSCEEEVTRLFSTVDSEL GTLSVLVNNAGILKTQSRLEDMTADRINAILTNNVTSYFLCCREAVKRMSTRHGGLGGVIVNVSSGAARSGSPNEYIDYA ASKGAIDTLTKGLSLEVAAEGIRVNCVRPGLIHTDMHADGGEPERIARLKSVIPLQRGGEPEEVAEAIYWLASEKSSFST GNYLDLAGGL
Sequences:
>Translated_250_residues MSTPKVAVITGGGRGIGAATSLLFSREGYAVCINYKSNAVAANKLAKTIIAEGGKCITVQADVSCEEEVTRLFSTVDSEL GTLSVLVNNAGILKTQSRLEDMTADRINAILTNNVTSYFLCCREAVKRMSTRHGGLGGVIVNVSSGAARSGSPNEYIDYA ASKGAIDTLTKGLSLEVAAEGIRVNCVRPGLIHTDMHADGGEPERIARLKSVIPLQRGGEPEEVAEAIYWLASEKSSFST GNYLDLAGGL >Mature_249_residues STPKVAVITGGGRGIGAATSLLFSREGYAVCINYKSNAVAANKLAKTIIAEGGKCITVQADVSCEEEVTRLFSTVDSELG TLSVLVNNAGILKTQSRLEDMTADRINAILTNNVTSYFLCCREAVKRMSTRHGGLGGVIVNVSSGAARSGSPNEYIDYAA SKGAIDTLTKGLSLEVAAEGIRVNCVRPGLIHTDMHADGGEPERIARLKSVIPLQRGGEPEEVAEAIYWLASEKSSFSTG NYLDLAGGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=36.3636363636364, Blast_Score=125, Evalue=3e-29, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=31.6205533596838, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=31.496062992126, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=29.9180327868852, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=29.7619047619048, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=31.3131313131313, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.8943089430894, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=30.859375, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=27.1317829457364, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=27.4590163934426, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=31.2820512820513, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=61.8852459016393, Blast_Score=320, Evalue=7e-89, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=33.6032388663968, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=33.0612244897959, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=31.496062992126, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=34.3096234309623, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=32.2448979591837, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=29.5081967213115, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.8548387096774, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=31.0077519379845, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.5140562248996, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=30, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=29.8804780876494, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787891, Length=248, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=36.1111111111111, Blast_Score=128, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.6007604562738, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=33.984375, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=35.8565737051793, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=34.1463414634146, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=32.1285140562249, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=31.0483870967742, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538480, Length=249, Percent_Identity=32.9317269076305, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=32.03125, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=247, Percent_Identity=29.9595141700405, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=31.7647058823529, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.8270676691729, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=32.295719844358, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=29.1497975708502, Blast_Score=90, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17551412, Length=248, Percent_Identity=30.241935483871, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=30.7984790874525, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=28.4615384615385, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=29.7959183673469, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17538182, Length=228, Percent_Identity=33.7719298245614, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=32.5842696629214, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=30.3846153846154, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=30.1158301158301, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=32.4324324324324, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=29.2307692307692, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=28.6852589641434, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=29.3893129770992, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=30.2238805970149, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI72001658, Length=224, Percent_Identity=31.6964285714286, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=29.5019157088123, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=28.2945736434109, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508651, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555612, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=240, Percent_Identity=28.3333333333333, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=254, Percent_Identity=27.1653543307087, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=35.8565737051793, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=35.4581673306773, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=34.375, Blast_Score=120, Evalue=9e-28, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=33.6, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=34.3873517786561, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.9268292682927, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24644337, Length=180, Percent_Identity=37.7777777777778, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=32.046332046332, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI17737361, Length=240, Percent_Identity=31.6666666666667, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=30.1980198019802, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076933, Length=202, Percent_Identity=30.6930693069307, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584748, Length=202, Percent_Identity=30.6930693069307, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24648693, Length=231, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21355889, Length=231, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571387, Length=240, Percent_Identity=29.5833333333333, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=28.75, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640492, Length=246, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=31.9502074688797, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648944, Length=196, Percent_Identity=29.5918367346939, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281364494, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26273; Mature: 26142
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPKVAVITGGGRGIGAATSLLFSREGYAVCINYKSNAVAANKLAKTIIAEGGKCITVQ CCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE ADVSCEEEVTRLFSTVDSELGTLSVLVNNAGILKTQSRLEDMTADRINAILTNNVTSYFL ECCCCHHHHHHHHHHHHHHHCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHH CCREAVKRMSTRHGGLGGVIVNVSSGAARSGSPNEYIDYAASKGAIDTLTKGLSLEVAAE HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEEEC GIRVNCVRPGLIHTDMHADGGEPERIARLKSVIPLQRGGEPEEVAEAIYWLASEKSSFST CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC GNYLDLAGGL CCEEECCCCC >Mature Secondary Structure STPKVAVITGGGRGIGAATSLLFSREGYAVCINYKSNAVAANKLAKTIIAEGGKCITVQ CCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE ADVSCEEEVTRLFSTVDSELGTLSVLVNNAGILKTQSRLEDMTADRINAILTNNVTSYFL ECCCCHHHHHHHHHHHHHHHCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHH CCREAVKRMSTRHGGLGGVIVNVSSGAARSGSPNEYIDYAASKGAIDTLTKGLSLEVAAE HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEEEC GIRVNCVRPGLIHTDMHADGGEPERIARLKSVIPLQRGGEPEEVAEAIYWLASEKSSFST CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC GNYLDLAGGL CCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]