Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694991

Identifier: 209694991

GI number: 209694991

Start: 1592512

End: 1592919

Strand: Direct

Name: 209694991

Synonym: VSAL_I1481

Alternate gene names: NA

Gene position: 1592512-1592919 (Clockwise)

Preceding gene: 209694990

Following gene: 209694992

Centisome position: 47.89

GC content: 36.52

Gene sequence:

>408_bases
TTGAATAGGTATAAGTGCGTAGTATGCAGGTCAGTTGTCATTGGAGAAATAGTATTGAAAAAGTTTGTATGGCTTATTGC
CTTTCTCATTGTAGGGTGCAGTGATGTTATGGATAATTATTATCCGACCTACCAAGATGCGTTGGAAAATAAGCTTTTCA
CTCGGGGTTGGTTACCCAATATTTTGCCTGAATCAACGAAAAAAATTGAGGTAAGTAATGATCTTGACCTTAATACATCG
GTTGGTCGCTTTGTTATCGATAAACAAGATCGCGATGCTTTTATATCGCAGCTTACTCTTGTGGACATCAAAAAAAATCG
CTTTGAATATTATTCCGGACAAAGTGTTTGGGCATTTAATATGGAAGACAATGGCGTTGTTCGTTATACGTTGTCAGTTA
ATAGATAA

Upstream 100 bases:

>100_bases
AAACGAAATTTAACCATAAATACATCAACATAATTTACAACCCTCGGTCGTGCTAACTTACCGAGTACTTCTGTTTTTTT
AGTGTCAATGTTAGGTATGT

Downstream 100 bases:

>100_bases
TGTTCTTGCTAACATTACGTACATTCAGAATATAAGGACAGATTGATGAGTACTCCAAAAGTGGCGGTTATTACCGGTGG
TGGTCGAGGCATTGGTGCAG

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNRYKCVVCRSVVIGEIVLKKFVWLIAFLIVGCSDVMDNYYPTYQDALENKLFTRGWLPNILPESTKKIEVSNDLDLNTS
VGRFVIDKQDRDAFISQLTLVDIKKNRFEYYSGQSVWAFNMEDNGVVRYTLSVNR

Sequences:

>Translated_135_residues
MNRYKCVVCRSVVIGEIVLKKFVWLIAFLIVGCSDVMDNYYPTYQDALENKLFTRGWLPNILPESTKKIEVSNDLDLNTS
VGRFVIDKQDRDAFISQLTLVDIKKNRFEYYSGQSVWAFNMEDNGVVRYTLSVNR
>Mature_135_residues
MNRYKCVVCRSVVIGEIVLKKFVWLIAFLIVGCSDVMDNYYPTYQDALENKLFTRGWLPNILPESTKKIEVSNDLDLNTS
VGRFVIDKQDRDAFISQLTLVDIKKNRFEYYSGQSVWAFNMEDNGVVRYTLSVNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15705; Mature: 15705

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYKCVVCRSVVIGEIVLKKFVWLIAFLIVGCSDVMDNYYPTYQDALENKLFTRGWLPN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCCCCC
ILPESTKKIEVSNDLDLNTSVGRFVIDKQDRDAFISQLTLVDIKKNRFEYYSGQSVWAFN
CCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCEEEECCCEEEEEE
MEDNGVVRYTLSVNR
CCCCCEEEEEEEECC
>Mature Secondary Structure
MNRYKCVVCRSVVIGEIVLKKFVWLIAFLIVGCSDVMDNYYPTYQDALENKLFTRGWLPN
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCCCCC
ILPESTKKIEVSNDLDLNTSVGRFVIDKQDRDAFISQLTLVDIKKNRFEYYSGQSVWAFN
CCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCEEEECCCEEEEEE
MEDNGVVRYTLSVNR
CCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA