Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694902
Identifier: 209694902
GI number: 209694902
Start: 1495390
End: 1495632
Strand: Direct
Name: 209694902
Synonym: VSAL_I1375
Alternate gene names: NA
Gene position: 1495390-1495632 (Clockwise)
Preceding gene: 209694901
Following gene: 209694903
Centisome position: 44.97
GC content: 33.74
Gene sequence:
>243_bases ATGGCTCCAATGGCGATATCAAATTATCTTGGGTGGCTAATTATATTATTAGGCAGTTATCCTTTTCTTTTCGTTGCGAT TAATATTTGTACCTACGAACCAATGCGTAGAAAAGTGAATATCTGGTTTAATATTCTCTGTATGTTATTAGTGGTTTTTC TTTTGGTTATGCATATGAATATAGACATTGTTTACGGTAAAGAGCTGCTTGATGCTTGGTATAGTAATAATCCACGGAAG TAG
Upstream 100 bases:
>100_bases TCTGCTGTCATTTATTTGATTTGGCTTAAAAATAGACAATAATTAGATTGATTCTCAATTTAGTTATATTCGTTTTTTAT TCGAGTACATGAGGTGAATA
Downstream 100 bases:
>100_bases AGGTTTATCCGTAGAGAAGCACTTTTAGTCCTATAGTTTTAAGGTAAATGTATGATGAATAGTTCAACGTTGCATCATTA GCATTTACAACGGAAAGACT
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MAPMAISNYLGWLIILLGSYPFLFVAINICTYEPMRRKVNIWFNILCMLLVVFLLVMHMNIDIVYGKELLDAWYSNNPRK
Sequences:
>Translated_80_residues MAPMAISNYLGWLIILLGSYPFLFVAINICTYEPMRRKVNIWFNILCMLLVVFLLVMHMNIDIVYGKELLDAWYSNNPRK >Mature_79_residues APMAISNYLGWLIILLGSYPFLFVAINICTYEPMRRKVNIWFNILCMLLVVFLLVMHMNIDIVYGKELLDAWYSNNPRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9430; Mature: 9298
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 7.5 %Met (Translated Protein) 10.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 6.3 %Met (Mature Protein) 8.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPMAISNYLGWLIILLGSYPFLFVAINICTYEPMRRKVNIWFNILCMLLVVFLLVMHMN CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC IDIVYGKELLDAWYSNNPRK CCEEECHHHHHHHHCCCCCC >Mature Secondary Structure APMAISNYLGWLIILLGSYPFLFVAINICTYEPMRRKVNIWFNILCMLLVVFLLVMHMN CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC IDIVYGKELLDAWYSNNPRK CCEEECHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA