Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694888

Identifier: 209694888

GI number: 209694888

Start: 1478060

End: 1478653

Strand: Direct

Name: 209694888

Synonym: VSAL_I1359

Alternate gene names: NA

Gene position: 1478060-1478653 (Clockwise)

Preceding gene: 209694887

Following gene: 209694893

Centisome position: 44.45

GC content: 39.73

Gene sequence:

>594_bases
ATGCAAGCTGCACAGCTAAATAATGAATGGCGAGTAAATTCTGTTGAAGTGCCATTATTTTCTGCATCAGAAAGTATTTA
TGCATTTATTGAACCGGAGTTATGGCCTGAGTGGAATGCCGAGTTAAGTTCTCATATTGATGAACTAGACATCGTCAATT
TATTTAATGCGACACAATTTAGTGCGATAAAAAATGGCCCAGTGGTGGTGAACTTATTGAGCTCTCAAGTTTTGTTAGAT
GTGTGTGTAAAAAAAATGAGCACGACACATTGTGGTGCGTTATTTCATACCGACATAGCGACAAATCGCAGTGCATTGAT
GTATTCCTTACGTAATGCATTGGTGGTAAAAAAGGGGCGTGGGGAAGTGTTTATTCGATATTACGACTCAAGAGGGTTGT
TGCCTTTAGTTGCTTCTATGTCTAATGAAGAGCGTCGCGACTACTTTTCTCCTATCAATAAAATAACGTGGTTTAACAAA
GCGTGGCTCAGTGTATCTGTCTTTGCACCGATCGCCCCTTTATTTTCAGATTATCAATGGAGCATAACTGAACAGCATTT
TGCGTCCATGCAATCCATCTCAACTCAGTGGTAA

Upstream 100 bases:

>100_bases
TAGCATCAACCAAACCAGTGATGAATTCAGCGGCGTACAGTGAAATGGTTGAAGATGGCGCATTAATGAAAGAGTTATGC
CAATGTGGTAAGGAGGGCAT

Downstream 100 bases:

>100_bases
AGGAGTCATAACACCATGAGCCAATCTTATATTGTTCAAAGCGGTGACACGCTGCTTAAAATTGCCATTGATAATGATGT
CCCTTTTACCACATTACTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MQAAQLNNEWRVNSVEVPLFSASESIYAFIEPELWPEWNAELSSHIDELDIVNLFNATQFSAIKNGPVVVNLLSSQVLLD
VCVKKMSTTHCGALFHTDIATNRSALMYSLRNALVVKKGRGEVFIRYYDSRGLLPLVASMSNEERRDYFSPINKITWFNK
AWLSVSVFAPIAPLFSDYQWSITEQHFASMQSISTQW

Sequences:

>Translated_197_residues
MQAAQLNNEWRVNSVEVPLFSASESIYAFIEPELWPEWNAELSSHIDELDIVNLFNATQFSAIKNGPVVVNLLSSQVLLD
VCVKKMSTTHCGALFHTDIATNRSALMYSLRNALVVKKGRGEVFIRYYDSRGLLPLVASMSNEERRDYFSPINKITWFNK
AWLSVSVFAPIAPLFSDYQWSITEQHFASMQSISTQW
>Mature_197_residues
MQAAQLNNEWRVNSVEVPLFSASESIYAFIEPELWPEWNAELSSHIDELDIVNLFNATQFSAIKNGPVVVNLLSSQVLLD
VCVKKMSTTHCGALFHTDIATNRSALMYSLRNALVVKKGRGEVFIRYYDSRGLLPLVASMSNEERRDYFSPINKITWFNK
AWLSVSVFAPIAPLFSDYQWSITEQHFASMQSISTQW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22446; Mature: 22446

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAAQLNNEWRVNSVEVPLFSASESIYAFIEPELWPEWNAELSSHIDELDIVNLFNATQF
CCCCCCCCCEEEEEEECEEEECCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHCCHHH
SAIKNGPVVVNLLSSQVLLDVCVKKMSTTHCGALFHTDIATNRSALMYSLRNALVVKKGR
HHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECHHHCCHHHHHHHHHHHEEEEECC
GEVFIRYYDSRGLLPLVASMSNEERRDYFSPINKITWFNKAWLSVSVFAPIAPLFSDYQW
CCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCC
SITEQHFASMQSISTQW
CCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQAAQLNNEWRVNSVEVPLFSASESIYAFIEPELWPEWNAELSSHIDELDIVNLFNATQF
CCCCCCCCCEEEEEEECEEEECCCCEEEEECCCCCCCCCCHHHHCCCHHHHHHHHCCHHH
SAIKNGPVVVNLLSSQVLLDVCVKKMSTTHCGALFHTDIATNRSALMYSLRNALVVKKGR
HHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEECHHHCCHHHHHHHHHHHEEEEECC
GEVFIRYYDSRGLLPLVASMSNEERRDYFSPINKITWFNKAWLSVSVFAPIAPLFSDYQW
CCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCC
SITEQHFASMQSISTQW
CCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA