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The map label for this gene is ygdL [H]

Identifier: 209694277

GI number: 209694277

Start: 773959

End: 774774

Strand: Direct

Name: ygdL [H]

Synonym: VSAL_I0688

Alternate gene names: 209694277

Gene position: 773959-774774 (Clockwise)

Preceding gene: 209694276

Following gene: 209694280

Centisome position: 23.28

GC content: 40.93

Gene sequence:

>816_bases
ATGCGCGAATTAACCACGCCTGCTTCTGAAAGTTATGACCAACGCTTTGGTGGCACTCGCCGTTTGTATGGTAATAGTGA
AGTAGAAATAATGCGTGCTGCACATGTCTGTGTGGTAGGTATCGGTGGTGTCGGATCGTGGGCTGTAGAGGCATTAGTTC
GTACTGGTCTTGGTGAGATTACCTTGATTGATATGGATGATGTGTGTGTGACGAATATTAACCGTCAGATCCATGCTATG
ACGGGTACAATCGGCCAAAGTAAAATTGAAGTAATGGCTGAACGCATTAAATTAATTAATCCTGAATGTAAGATTAATTT
GATTGATGACTTCATCACCCCTGAAAACCAAGCAGAATATATTTCTAAAGAATTTGATTACGTACTTGATGCCATTGATA
GCATGAAACCTAAAGCGGCGTTATTAGCTTATTGTAAGAGCAATAAGATTAAAGTAATTACAACCGGTGGTGCAGGTGGT
CAAACTGACCCTACTCAAATTGCGATTACGGATTTATCCAAAACAATTCAAGATCCTTTAGCAAAGAAATTGCGTGATAC
GTTACGTCATCATCATAACTTTACTAAGAATACAAAACGTAAATTTGGTATTGATTGTGTGTACTCGACTGAGCATTTGA
AGTACCCACAAGCGGATGGTTCTGTGTGTGCAACTAAAGCAACAGCAGAAGGGCCTAAACGTATGGATTGTGCGACGGGT
TTTGGTGCTGCAACGGTGGTAACTGCGACCTTTGGTTTTGTTGCGGTGTCGAGAATTGTAGAGAAGTTGATTGAGAAACA
CTCTACTAGAGACTAG

Upstream 100 bases:

>100_bases
AAATAGGGCTGAAATAAACCTGGATTTCTTAAAGCTTGATCTTCTAAAAAAGAGTGCGTATAAATCGTGCTCTTTTTTTG
TTTTTGAGTAAGGAAAACCC

Downstream 100 bases:

>100_bases
AGACTAGAGACTAGAGACTAGAGACTAGAGACTATAAGTGCGTGTATGGCTGGTGTGGAAAGTATTGCTATCAATACCAG
CATTTTCTGCTCTTATAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRELTTPASESYDQRFGGTRRLYGNSEVEIMRAAHVCVVGIGGVGSWAVEALVRTGLGEITLIDMDDVCVTNINRQIHAM
TGTIGQSKIEVMAERIKLINPECKINLIDDFITPENQAEYISKEFDYVLDAIDSMKPKAALLAYCKSNKIKVITTGGAGG
QTDPTQIAITDLSKTIQDPLAKKLRDTLRHHHNFTKNTKRKFGIDCVYSTEHLKYPQADGSVCATKATAEGPKRMDCATG
FGAATVVTATFGFVAVSRIVEKLIEKHSTRD

Sequences:

>Translated_271_residues
MRELTTPASESYDQRFGGTRRLYGNSEVEIMRAAHVCVVGIGGVGSWAVEALVRTGLGEITLIDMDDVCVTNINRQIHAM
TGTIGQSKIEVMAERIKLINPECKINLIDDFITPENQAEYISKEFDYVLDAIDSMKPKAALLAYCKSNKIKVITTGGAGG
QTDPTQIAITDLSKTIQDPLAKKLRDTLRHHHNFTKNTKRKFGIDCVYSTEHLKYPQADGSVCATKATAEGPKRMDCATG
FGAATVVTATFGFVAVSRIVEKLIEKHSTRD
>Mature_271_residues
MRELTTPASESYDQRFGGTRRLYGNSEVEIMRAAHVCVVGIGGVGSWAVEALVRTGLGEITLIDMDDVCVTNINRQIHAM
TGTIGQSKIEVMAERIKLINPECKINLIDDFITPENQAEYISKEFDYVLDAIDSMKPKAALLAYCKSNKIKVITTGGAGG
QTDPTQIAITDLSKTIQDPLAKKLRDTLRHHHNFTKNTKRKFGIDCVYSTEHLKYPQADGSVCATKATAEGPKRMDCATG
FGAATVVTATFGFVAVSRIVEKLIEKHSTRD

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI4885649, Length=134, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789177, Length=260, Percent_Identity=66.1538461538461, Blast_Score=383, Evalue=1e-108,
Organism=Escherichia coli, GI1787048, Length=126, Percent_Identity=31.7460317460317, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082356, Length=130, Percent_Identity=31.5384615384615, Blast_Score=68, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321790, Length=211, Percent_Identity=28.436018957346, Blast_Score=102, Evalue=8e-23,
Organism=Saccharomyces cerevisiae, GI6322825, Length=207, Percent_Identity=32.3671497584541, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24660640, Length=131, Percent_Identity=32.0610687022901, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29687; Mature: 29687

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELTTPASESYDQRFGGTRRLYGNSEVEIMRAAHVCVVGIGGVGSWAVEALVRTGLGEI
CCCCCCCCHHHHHHHCCCCEEECCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHCCCCCE
TLIDMDDVCVTNINRQIHAMTGTIGQSKIEVMAERIKLINPECKINLIDDFITPENQAEY
EEEECCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
ISKEFDYVLDAIDSMKPKAALLAYCKSNKIKVITTGGAGGQTDPTQIAITDLSKTIQDPL
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH
AKKLRDTLRHHHNFTKNTKRKFGIDCVYSTEHLKYPQADGSVCATKATAEGPKRMDCATG
HHHHHHHHHHHCCCCCCCCHHHCCEEEECHHHCCCCCCCCCEEEECCCCCCCCCCHHHCC
FGAATVVTATFGFVAVSRIVEKLIEKHSTRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRELTTPASESYDQRFGGTRRLYGNSEVEIMRAAHVCVVGIGGVGSWAVEALVRTGLGEI
CCCCCCCCHHHHHHHCCCCEEECCCCCHHHHEEEEEEEEEECCCHHHHHHHHHHCCCCCE
TLIDMDDVCVTNINRQIHAMTGTIGQSKIEVMAERIKLINPECKINLIDDFITPENQAEY
EEEECCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
ISKEFDYVLDAIDSMKPKAALLAYCKSNKIKVITTGGAGGQTDPTQIAITDLSKTIQDPL
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHH
AKKLRDTLRHHHNFTKNTKRKFGIDCVYSTEHLKYPQADGSVCATKATAEGPKRMDCATG
HHHHHHHHHHHCCCCCCCCHHHCCEEEECHHHCCCCCCCCCEEEECCCCCCCCCCHHHCC
FGAATVVTATFGFVAVSRIVEKLIEKHSTRD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]