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The map label for this gene is csrA

Identifier: 209694228

GI number: 209694228

Start: 707472

End: 707672

Strand: Direct

Name: csrA

Synonym: VSAL_I0637

Alternate gene names: 209694228

Gene position: 707472-707672 (Clockwise)

Preceding gene: 209694227

Following gene: 209694229

Centisome position: 21.28

GC content: 43.28

Gene sequence:

>201_bases
ATGCTAATTTTGACTCGCCGTGTAGGTGAAACGCTAATGATTGGTGACGAAGTAACAGTTACTGTACTTGGCGTTAAAGG
CAACCAAGTACGTATCGGTGTTAACGCGCCTAAAGAAGTATCTGTACACCGTGAAGAGATTTACATGCGTATTCAAGCAG
AAAAGGGAACTACTCCTGCTGCTGCACCAGGTAACTTTTAA

Upstream 100 bases:

>100_bases
TCTGATCGCTGTTTCTTGAGCAGAGACGTTTGTGAACATAAGCGATAACGGACAATACATACATTTATTATAATACTGAG
ATAACTCAAGGAGCATTCGA

Downstream 100 bases:

>100_bases
TATCGCATGAAAATAGGCTAACATTGTTGGCCTTATTTATTTTAGTCAGTTGTTAATTTGACTGGAATAAATAGAAAATG
AGAGGCACAAAACTCGTATC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGTTPAAAPGNF

Sequences:

>Translated_66_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGTTPAAAPGNF
>Mature_66_residues
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGTTPAAAPGNF

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=90, Blast_Score=108, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_ALISL (B6ENI1)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262156.1
- GeneID:   6988771
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0637
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7163; Mature: 7163

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGTTPA
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEECEEEEEEECCCCCCCC
AAPGNF
CCCCCC
>Mature Secondary Structure
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYMRIQAEKGTTPA
CEEEECCCCCEEEECCCEEEEEEECCCCEEEEECCCCCCCEEEECEEEEEEECCCCCCCC
AAPGNF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA