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The map label for this gene is deoB [H]

Identifier: 209694213

GI number: 209694213

Start: 683742

End: 684962

Strand: Direct

Name: deoB [H]

Synonym: VSAL_I0621

Alternate gene names: 209694213

Gene position: 683742-684962 (Clockwise)

Preceding gene: 209694212

Following gene: 209694215

Centisome position: 20.56

GC content: 42.51

Gene sequence:

>1221_bases
ATGAAACGTGCAATTATTTTAGTTCTTGATTCATTTGGTATTGGTGCAGCAGGTGATGCTGAAAAATTTGGTGATGTGGG
TTCAGATACAATGGGTCACATTGCAGAACAGTGTGACAAAGGACTTGCCGATAATGGAAACCGTAAAGGACCATTAACGC
TTCCAAATCTATCAAAGCTGGGTTTAGCAATGGCAGGTAAAGAGTCTACGGGCAAATTAGCCGCAGGTTTAGACGCTGAT
GCTGAGATTATTGGTGCTTATGGTCATGCCGCTGAATTGTCTTCAGGTAAAGATACGCCTTCTGGTCACTGGGAAATTGC
AGGCGTACCTGTCTTATTTGATTGGGGTTACTTTAGCGATAAAGAAAATAGTTTCCCTAAAGAGTTAACCGACCGAATTC
TTGCTCGTGCCAACCTTTCTGGTTACCTAGGTAATTGCCATGCATCAGGTACACAAGTACTGGATGATTTAGGTGAAGAA
CACATGAAGACGGGCATGCCGATCTTCTACACCTCTGCTGATTCGGTATTCCAAATTGCGTGTCATGAAGAAACGTTTGG
CTTAGATAATTTATTAACACTTTGCCAAATCGCACGTGAAGAACTTGAAGATTATAATATTGGCCGAGTGATAGCGCGTC
CATTTATTGGTGCAGGTAAAGGTCAATTTGAACGTACGGGTAACCGCCGCGATCTTTCTCTGGAACCGCCAGCAATTACC
GTATTACAAAAACTGGTAGAAGAGAAAAACGGTCACGTACATTCTATTGGTAAAATCTCTGATATTTATGCTGGTTGTGG
TATTACACAAAAAACCAAAGCAACAGGCATTCCAGCATTGTTTGATGCAACCAAAGAGGCAATTACGGCGGCGAGTGATA
ACACCATCGTATTTACTAACTTTGTGGATTTTGATTCAGCGTATGGTCACCGTCGTGACGTTGCAGGTTATGCGGCGGCA
CTAGAGTATTTTGATGGAAGACTTCCAGAGATCATGGAAATGCTACAAGAAGACGATATTCTAATCCTAACGGCTGATCA
TGGTTGTGATCCTACATGGCCTGGTACCGATCATACTCGTGAACATATTCCCGTTCTTGTTTATGGACACAAAGTACCTG
CGGGTTCATTGGGGCTTCGTGATACCTTTGCCGATATAGGGCAGACCTTAGCAGAGTATTTTGAAATCTCTGATATGGAA
TATGGAAAATCATTCCTATAA

Upstream 100 bases:

>100_bases
GATGCAGTTAAAGCCGCTATCGTGATCAGCGAAGAACAACCAGAAGCGACACCGGAAGTTTATCGTAAAGTTCGCTCACA
AGATGTGTAAGGAAGAAACC

Downstream 100 bases:

>100_bases
AAATAATAAGCAGTAGAGCCCTCTCTACTGCTTTTTTCTAGTTTAAGTTTAAAAAGAAAGGGTAAAAATTATGGCAACTC
CACATATTAATGCTGAAATG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKRAIILVLDSFGIGAAGDAEKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKLAAGLDAD
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFSDKENSFPKELTDRILARANLSGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGAGKGQFERTGNRRDLSLEPPAIT
VLQKLVEEKNGHVHSIGKISDIYAGCGITQKTKATGIPALFDATKEAITAASDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDGRLPEIMEMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGLRDTFADIGQTLAEYFEISDME
YGKSFL

Sequences:

>Translated_406_residues
MKRAIILVLDSFGIGAAGDAEKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKLAAGLDAD
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFSDKENSFPKELTDRILARANLSGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGAGKGQFERTGNRRDLSLEPPAIT
VLQKLVEEKNGHVHSIGKISDIYAGCGITQKTKATGIPALFDATKEAITAASDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDGRLPEIMEMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGLRDTFADIGQTLAEYFEISDME
YGKSFL
>Mature_406_residues
MKRAIILVLDSFGIGAAGDAEKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKLAAGLDAD
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFSDKENSFPKELTDRILARANLSGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGAGKGQFERTGNRRDLSLEPPAIT
VLQKLVEEKNGHVHSIGKISDIYAGCGITQKTKATGIPALFDATKEAITAASDNTIVFTNFVDFDSAYGHRRDVAGYAAA
LEYFDGRLPEIMEMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGLRDTFADIGQTLAEYFEISDME
YGKSFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=408, Percent_Identity=75.4901960784314, Blast_Score=633, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=448, Percent_Identity=29.2410714285714, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43827; Mature: 43827

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIILVLDSFGIGAAGDAEKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKL
CCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
GLAMAGKESTGKLAAGLDADAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFSD
HHEECCCCCCCCEEECCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCC
KENSFPKELTDRILARANLSGYLGNCHASGTQVLDDLGEEHMKTGMPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGAGKGQFERTGNRRDLSLEPPAIT
ECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHHH
VLQKLVEEKNGHVHSIGKISDIYAGCGITQKTKATGIPALFDATKEAITAASDNTIVFTN
HHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
FVDFDSAYGHRRDVAGYAAALEYFDGRLPEIMEMLQEDDILILTADHGCDPTWPGTDHTR
EECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
EHIPVLVYGHKVPAGSLGLRDTFADIGQTLAEYFEISDMEYGKSFL
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKRAIILVLDSFGIGAAGDAEKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKL
CCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
GLAMAGKESTGKLAAGLDADAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFSD
HHEECCCCCCCCEEECCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCC
KENSFPKELTDRILARANLSGYLGNCHASGTQVLDDLGEEHMKTGMPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGAGKGQFERTGNRRDLSLEPPAIT
ECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHHH
VLQKLVEEKNGHVHSIGKISDIYAGCGITQKTKATGIPALFDATKEAITAASDNTIVFTN
HHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
FVDFDSAYGHRRDVAGYAAALEYFDGRLPEIMEMLQEDDILILTADHGCDPTWPGTDHTR
EECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
EHIPVLVYGHKVPAGSLGLRDTFADIGQTLAEYFEISDMEYGKSFL
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA