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The map label for this gene is ompU [H]

Identifier: 209694180

GI number: 209694180

Start: 649514

End: 650515

Strand: Reverse

Name: ompU [H]

Synonym: VSAL_I0588

Alternate gene names: 209694180

Gene position: 650515-649514 (Counterclockwise)

Preceding gene: 209694182

Following gene: 209694179

Centisome position: 19.56

GC content: 42.12

Gene sequence:

>1002_bases
ATGAACAAGAACGTATTGGCTCTTGCAGTAGCCGCTATTATGTCAACTGGTGCAGTTAACGCAGCAGAGATCTACAAAGG
CGCAGACCAAACTCTAGAAATGGGCGGTCGTGCTGAAGCACGTCTATCTATGAAAGATGGTAAAGCTGAAGATGCATCAC
GTATCCGTTTAAACGTTAAAGGCACAACTCAAATTTCTGACGGTCTATACGGTGTTGGTTTCTGGGAAGGTGAATTCACT
ACTGCTGAAAATGGCGGTGTTGATGGGAATTCAAATCTTGATTCTCGTTACGCATATGCAGGAATGGGCGGTAACTTCGG
TGAAGTAACTTACGGTAAAAATGACGGTGCTCTAGGTGTTATCACTGATTTCACCGATATCATGGCATATGCTGGTAACA
CAGCAGCAGCTAAAATTGCCGTAGCTGACCGTACAGATAACAACTTAGGCTACAAAGGTACATTTGGTGATTTCTCAGCT
AAAGCTAACTACCGCTTTGCTGACCGTACTGAAAATCTAGCTGGAACTGAGTATAAAGATAATGGCCAAGATGGATACGC
ATTATCAGGTATCTACGCATTCGGTGATTCTGGTTTCAAACTAGGTGCTGGTTACGCGGATCAAGCAGAACAAAATGAAG
TTATGCTTGCTGGTTCTTATACTATGGACAACCTATACTTTGCTGGTACATTCACAAACGGTGAATTAGCAGAGAAAAAC
GCTGACTACACAGGCTACGAAGCAGCTGTAGCTTATACTATGGGTAAAACCGTATTTACTTCTACGTATAACAACGCTGA
AACAAATGACGAAACATCTGCTGATAACTTTGCTGTTGATGCAACATACTTCTTCAACGCTAACTTCCGTACGTACATTT
CTTACAACTTCAACCTAATCAGTGAAGGTGATAAATTAGGTACTGCTGGCGTATCAAATGCTAAAGCTTCTGATGTAGAT
GCAGAAAACGAGCTAGCTCTAGGTATGCGTTACGACTTCTAA

Upstream 100 bases:

>100_bases
GTATCTATTGATAACTCTTTTTTAAACGTAATAAGTTATCAACAAACGATACTAAATATACTAAACTTATTTCTCCTCCA
CCCTTATAGGAAATTACATC

Downstream 100 bases:

>100_bases
TAAAGTCTTAATAATTACTTAAATAAAACGCTCACTTCGGTGGGCGTTTTTTATTACTCCCCCCTTATTTTTATTCACTT
TCCGCATACAAACCGACTCA

Product: major outer membrane protein OmpU

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNKNVLALAVAAIMSTGAVNAAEIYKGADQTLEMGGRAEARLSMKDGKAEDASRIRLNVKGTTQISDGLYGVGFWEGEFT
TAENGGVDGNSNLDSRYAYAGMGGNFGEVTYGKNDGALGVITDFTDIMAYAGNTAAAKIAVADRTDNNLGYKGTFGDFSA
KANYRFADRTENLAGTEYKDNGQDGYALSGIYAFGDSGFKLGAGYADQAEQNEVMLAGSYTMDNLYFAGTFTNGELAEKN
ADYTGYEAAVAYTMGKTVFTSTYNNAETNDETSADNFAVDATYFFNANFRTYISYNFNLISEGDKLGTAGVSNAKASDVD
AENELALGMRYDF

Sequences:

>Translated_333_residues
MNKNVLALAVAAIMSTGAVNAAEIYKGADQTLEMGGRAEARLSMKDGKAEDASRIRLNVKGTTQISDGLYGVGFWEGEFT
TAENGGVDGNSNLDSRYAYAGMGGNFGEVTYGKNDGALGVITDFTDIMAYAGNTAAAKIAVADRTDNNLGYKGTFGDFSA
KANYRFADRTENLAGTEYKDNGQDGYALSGIYAFGDSGFKLGAGYADQAEQNEVMLAGSYTMDNLYFAGTFTNGELAEKN
ADYTGYEAAVAYTMGKTVFTSTYNNAETNDETSADNFAVDATYFFNANFRTYISYNFNLISEGDKLGTAGVSNAKASDVD
AENELALGMRYDF
>Mature_333_residues
MNKNVLALAVAAIMSTGAVNAAEIYKGADQTLEMGGRAEARLSMKDGKAEDASRIRLNVKGTTQISDGLYGVGFWEGEFT
TAENGGVDGNSNLDSRYAYAGMGGNFGEVTYGKNDGALGVITDFTDIMAYAGNTAAAKIAVADRTDNNLGYKGTFGDFSA
KANYRFADRTENLAGTEYKDNGQDGYALSGIYAFGDSGFKLGAGYADQAEQNEVMLAGSYTMDNLYFAGTFTNGELAEKN
ADYTGYEAAVAYTMGKTVFTSTYNNAETNDETSADNFAVDATYFFNANFRTYISYNFNLISEGDKLGTAGVSNAKASDVD
AENELALGMRYDF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=375, Percent_Identity=27.4666666666667, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787160, Length=380, Percent_Identity=27.3684210526316, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788544, Length=388, Percent_Identity=26.8041237113402, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 35478; Mature: 35478

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNVLALAVAAIMSTGAVNAAEIYKGADQTLEMGGRAEARLSMKDGKAEDASRIRLNVK
CCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCEEEEEEEE
GTTQISDGLYGVGFWEGEFTTAENGGVDGNSNLDSRYAYAGMGGNFGEVTYGKNDGALGV
CCEEECCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCEEE
ITDFTDIMAYAGNTAAAKIAVADRTDNNLGYKGTFGDFSAKANYRFADRTENLAGTEYKD
EECHHHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCC
NGQDGYALSGIYAFGDSGFKLGAGYADQAEQNEVMLAGSYTMDNLYFAGTFTNGELAEKN
CCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECEEECCEEEEEEECCCCHHHCC
ADYTGYEAAVAYTMGKTVFTSTYNNAETNDETSADNFAVDATYFFNANFRTYISYNFNLI
CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEEE
SEGDKLGTAGVSNAKASDVDAENELALGMRYDF
ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNKNVLALAVAAIMSTGAVNAAEIYKGADQTLEMGGRAEARLSMKDGKAEDASRIRLNVK
CCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCEEEEEEEE
GTTQISDGLYGVGFWEGEFTTAENGGVDGNSNLDSRYAYAGMGGNFGEVTYGKNDGALGV
CCEEECCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCEEE
ITDFTDIMAYAGNTAAAKIAVADRTDNNLGYKGTFGDFSAKANYRFADRTENLAGTEYKD
EECHHHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCC
NGQDGYALSGIYAFGDSGFKLGAGYADQAEQNEVMLAGSYTMDNLYFAGTFTNGELAEKN
CCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCEEEEECEEECCEEEEEEECCCCHHHCC
ADYTGYEAAVAYTMGKTVFTSTYNNAETNDETSADNFAVDATYFFNANFRTYISYNFNLI
CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEEE
SEGDKLGTAGVSNAKASDVDAENELALGMRYDF
ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]