| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is mviN [H]
Identifier: 209694170
GI number: 209694170
Start: 634534
End: 636093
Strand: Direct
Name: mviN [H]
Synonym: VSAL_I0578
Alternate gene names: 209694170
Gene position: 634534-636093 (Clockwise)
Preceding gene: 209694168
Following gene: 209694171
Centisome position: 19.08
GC content: 39.29
Gene sequence:
>1560_bases GTGAGTAAACGACTTTTACGTTCTGGCTTAATCGTCAGTATCATGACTTTAGTGTCTCGAGTACTCGGTTTAGTCCGTGA TGTAGTAGTGGCAAATTTAATGGGCGCAGGGGCATCTGCAGATGTTTTCTTCTTTGCGAATAAGATACCTAACTTCTTAC GCCGCTTATTTGCTGAGGGGGCTTTTTCACAAGCCTTCGTCCCTGTATTAACCGAATATCACGCCAGTGGTGATGATAAT AAAACGCGAGAATTAATTGCGAAAGCGTCGGGAACTCTTGGTGTGCTTGTCACCATTGTTACTTTTTTCGGTATTTTAGG CTCTGGTGTCGTAACGGCATTATTTGGGGCTGGTTGGTTTATGGATTGGTTGAATGATGGGCCTAATGCGCCTAAATTTG AGCTTGCTAGCTTCTTATTAAAAATAACCTTTCCTTATCTCTGGTTTATTACTTTTGTTGCTTTATCCGGTGCGATTTTA AATACGTTAGGTAAATTTGCCGTTTCTTCTTTTACTCCTGTTTTTTTAAATGTAGCCATTATTGCTTGTGCCTATTTTAT TTCACCAAACTTAGAGCAACCTGAAATTGGGTTAGCGATTGGTGTTTTTCTTGGCGGTTTAATTCAATTCTTATTCCAGA TCCCATTTCTTTATAAAGCCAAAATGTTGGTTCGTCCGCAATGGGGCTGGAATGATCCTGGTGTTGTAAAAATTAGAACC TTAATGATCCCTGCATTATTTGGGGTATCGGTAAGTCAAATTAACTTATTGTTTGATACTTTTATCGCGAGTTTTTTAGC GACGGGTTCTATCAGTTGGCTTTACTATTCGGATCGTTTATTAGAGTTCCCATTAGGGTTATTTGGGATTGCTATTGCCA CTGTGATCCTACCTGCACTCTCTCGTCAGCATGTTGATGCAAAAGGGGCGGGGTTCTCTAATACGATGGATTGGGGAGTT AGAATGGTTATTTTACTTGGGATCCCTGCAATGTTAGGTTTAATGGTATTAGCAAAACCTATGCTAATGGTATTGTTCAT GCGTGGTGAATTTTCACCAAATGATGTACATAACGCCTCGCTGTCTTTGATCGCCTATGGGTCTGGCTTATTAAACTTTA TGTTAATCAAGATATTAGCGCCTGGTTATTATGCAAGGCAAGATACTAAAACTCCGGTTCGTTACGGCATCATTGCGATG GTTACGAATATGGTTTTTAATGCTATTTTTGCGTCTTTCTATGGCTATGTTGGCCTAGCAATGGCAACGGCATTGTCTGC ATTTGTGAATATGGCATTATTATATCGCGGATTACATTTAGCGAATGTTTATAAATTATCAAAAGAAACCATGATATTTA TTGTGAAATTGGTTTTATCTGGTGCCATTATGGTTGGCGTTTTATTGTGGTTTATACCAGCAATGAACGTATGGCTTGAG TGGGATCTAGCAAAAAGAATGGCCATGTTATTAAGCTTTATTGCTCTTGGTGCGGTAAGTTATTTAATTCCTGCTGTGAT ATTGGGTTTGCGCCCACGTCAATTACGAGTTAATGCATAA
Upstream 100 bases:
>100_bases GAATGGCAAAACACGGTTAAGATGGCGTGCATTCTAACAGCATTTTTTACAGTTAGTAAGCTCTTTATGGTCATCATCAC CATCTTTGTGAGGTTTTTTT
Downstream 100 bases:
>100_bases TCTTGTTATTCACTGAGTTGAGTGGTTTGGCTAGTAAGATTAGTATATAATTCGTCAGTTTTTTTGAGCAAATAAATTGA TATTGAGATAATGGAATTAA
Product: virulence factor MviN homolog
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDN KTRELIAKASGTLGVLVTIVTFFGILGSGVVTALFGAGWFMDWLNDGPNAPKFELASFLLKITFPYLWFITFVALSGAIL NTLGKFAVSSFTPVFLNVAIIACAYFISPNLEQPEIGLAIGVFLGGLIQFLFQIPFLYKAKMLVRPQWGWNDPGVVKIRT LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRQHVDAKGAGFSNTMDWGV RMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHNASLSLIAYGSGLLNFMLIKILAPGYYARQDTKTPVRYGIIAM VTNMVFNAIFASFYGYVGLAMATALSAFVNMALLYRGLHLANVYKLSKETMIFIVKLVLSGAIMVGVLLWFIPAMNVWLE WDLAKRMAMLLSFIALGAVSYLIPAVILGLRPRQLRVNA
Sequences:
>Translated_519_residues MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDN KTRELIAKASGTLGVLVTIVTFFGILGSGVVTALFGAGWFMDWLNDGPNAPKFELASFLLKITFPYLWFITFVALSGAIL NTLGKFAVSSFTPVFLNVAIIACAYFISPNLEQPEIGLAIGVFLGGLIQFLFQIPFLYKAKMLVRPQWGWNDPGVVKIRT LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRQHVDAKGAGFSNTMDWGV RMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHNASLSLIAYGSGLLNFMLIKILAPGYYARQDTKTPVRYGIIAM VTNMVFNAIFASFYGYVGLAMATALSAFVNMALLYRGLHLANVYKLSKETMIFIVKLVLSGAIMVGVLLWFIPAMNVWLE WDLAKRMAMLLSFIALGAVSYLIPAVILGLRPRQLRVNA >Mature_518_residues SKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDNK TRELIAKASGTLGVLVTIVTFFGILGSGVVTALFGAGWFMDWLNDGPNAPKFELASFLLKITFPYLWFITFVALSGAILN TLGKFAVSSFTPVFLNVAIIACAYFISPNLEQPEIGLAIGVFLGGLIQFLFQIPFLYKAKMLVRPQWGWNDPGVVKIRTL MIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRQHVDAKGAGFSNTMDWGVR MVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHNASLSLIAYGSGLLNFMLIKILAPGYYARQDTKTPVRYGIIAMV TNMVFNAIFASFYGYVGLAMATALSAFVNMALLYRGLHLANVYKLSKETMIFIVKLVLSGAIMVGVLLWFIPAMNVWLEW DLAKRMAMLLSFIALGAVSYLIPAVILGLRPRQLRVNA
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=514, Percent_Identity=40.6614785992218, Blast_Score=375, Evalue=1e-105,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 56826; Mature: 56695
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC AFSQAFVPVLTEYHASGDDNKTRELIAKASGTLGVLVTIVTFFGILGSGVVTALFGAGWF CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDWLNDGPNAPKFELASFLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVAI HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IACAYFISPNLEQPEIGLAIGVFLGGLIQFLFQIPFLYKAKMLVRPQWGWNDPGVVKIRT HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEHHH LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH SRQHVDAKGAGFSNTMDWGVRMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHNAS HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LSLIAYGSGLLNFMLIKILAPGYYARQDTKTPVRYGIIAMVTNMVFNAIFASFYGYVGLA EEHEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MATALSAFVNMALLYRGLHLANVYKLSKETMIFIVKLVLSGAIMVGVLLWFIPAMNVWLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WDLAKRMAMLLSFIALGAVSYLIPAVILGLRPRQLRVNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC >Mature Secondary Structure SKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC AFSQAFVPVLTEYHASGDDNKTRELIAKASGTLGVLVTIVTFFGILGSGVVTALFGAGWF CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDWLNDGPNAPKFELASFLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVAI HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IACAYFISPNLEQPEIGLAIGVFLGGLIQFLFQIPFLYKAKMLVRPQWGWNDPGVVKIRT HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEHHH LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH SRQHVDAKGAGFSNTMDWGVRMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHNAS HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LSLIAYGSGLLNFMLIKILAPGYYARQDTKTPVRYGIIAMVTNMVFNAIFASFYGYVGLA EEHEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MATALSAFVNMALLYRGLHLANVYKLSKETMIFIVKLVLSGAIMVGVLLWFIPAMNVWLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WDLAKRMAMLLSFIALGAVSYLIPAVILGLRPRQLRVNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9457888; 10952301 [H]