| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694163
Identifier: 209694163
GI number: 209694163
Start: 628490
End: 629293
Strand: Direct
Name: 209694163
Synonym: VSAL_I0571
Alternate gene names: NA
Gene position: 628490-629293 (Clockwise)
Preceding gene: 209694162
Following gene: 209694164
Centisome position: 18.9
GC content: 40.05
Gene sequence:
>804_bases ATGGTCATTAGTGTATGGGAGCTATTTGCTCTCTATCTTGCCTTAGGCAGTATTGTTGGTGTTATGGCAGGGTTATTAGG GATTGGCGGGGGCTTATTAGTTGTGCCTGCATTACTTTGGTTACTGCCCCAAGCTGGGATTTCCCCTGATATTGTGATGC AAATGGCGTTAGGAACTTCTCTGGCGACGATTATTTTGACATCCGCGTCATCTGCATTGAACCATTTACGGTTAGGTAAT GTCGAATTCAAACTCATTAAAGGGTTAGCACCGGGCGTTATTGTTGGTGGTTTTCTAGGGAGTTATGCGGCTGAATTAAT TCCTAGTCAATATTTACCTAAAGTATTTGGTGTGATTGTCTTACTATTAGCTTTACAAATGTTATTAGCGTTAAAATTTA CAGCGACAAGACCGTTACCATCGCCATTAAAAGTGGGTATTAGTGGTGGGTTCATAGGTGTGATATCAAGCCTTGCAGGG ATCGGTGGTGGTTCACTTACCGTACCTTATTTAAATTTTCATGGTGTAGAAATGCGAAAAGCCATTGGGAGTTCTTCATT ATGTGGAATGCTTATCGCAATGGCAGGTATGATTGGCTTTATTATTCATGGTGCACAAGTCTCTGATTTACCACCAATGA GTTTAGGCTATGTTTATTTACCTGCATTATGCGGGGTTGGACTTACCTCCATTTTTACAACCCGTATTGGTGCAAAGTTA ACATCGTATTTACCTACACCAACATTAAAAAAAATCTTTGCCGTATTTCTAGTATTTATCGGCACTAAAATGTTCTTAGG ATAA
Upstream 100 bases:
>100_bases AAAACTTTTACACCATGATGATGCAGAGAGTATTTTGGCTGATATGATGGTCTTTTTTGAAAAGCATGATCTTTCAGGAT TCATCAGAGCAGGAAAATAA
Downstream 100 bases:
>100_bases GAGAGTAATCATGAGTCAGGGGTATTTAAACTTCCCACATATCGATCCAATATTATTTCAAATTGGACCATTGGCGATAC GTTGGTATGGCTTAATGTAT
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL TSYLPTPTLKKIFAVFLVFIGTKMFLG
Sequences:
>Translated_267_residues MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL TSYLPTPTLKKIFAVFLVFIGTKMFLG >Mature_267_residues MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL TSYLPTPTLKKIFAVFLVFIGTKMFLG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 27647; Mature: 27647
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTS CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LATIILTSASSALNHLRLGNVEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIV HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAGIGGGSLTVPYLNFHGVEMRK HHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHH AIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TSYLPTPTLKKIFAVFLVFIGTKMFLG HHHCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTS CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LATIILTSASSALNHLRLGNVEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIV HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAGIGGGSLTVPYLNFHGVEMRK HHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHH AIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TSYLPTPTLKKIFAVFLVFIGTKMFLG HHHCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]