Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694163

Identifier: 209694163

GI number: 209694163

Start: 628490

End: 629293

Strand: Direct

Name: 209694163

Synonym: VSAL_I0571

Alternate gene names: NA

Gene position: 628490-629293 (Clockwise)

Preceding gene: 209694162

Following gene: 209694164

Centisome position: 18.9

GC content: 40.05

Gene sequence:

>804_bases
ATGGTCATTAGTGTATGGGAGCTATTTGCTCTCTATCTTGCCTTAGGCAGTATTGTTGGTGTTATGGCAGGGTTATTAGG
GATTGGCGGGGGCTTATTAGTTGTGCCTGCATTACTTTGGTTACTGCCCCAAGCTGGGATTTCCCCTGATATTGTGATGC
AAATGGCGTTAGGAACTTCTCTGGCGACGATTATTTTGACATCCGCGTCATCTGCATTGAACCATTTACGGTTAGGTAAT
GTCGAATTCAAACTCATTAAAGGGTTAGCACCGGGCGTTATTGTTGGTGGTTTTCTAGGGAGTTATGCGGCTGAATTAAT
TCCTAGTCAATATTTACCTAAAGTATTTGGTGTGATTGTCTTACTATTAGCTTTACAAATGTTATTAGCGTTAAAATTTA
CAGCGACAAGACCGTTACCATCGCCATTAAAAGTGGGTATTAGTGGTGGGTTCATAGGTGTGATATCAAGCCTTGCAGGG
ATCGGTGGTGGTTCACTTACCGTACCTTATTTAAATTTTCATGGTGTAGAAATGCGAAAAGCCATTGGGAGTTCTTCATT
ATGTGGAATGCTTATCGCAATGGCAGGTATGATTGGCTTTATTATTCATGGTGCACAAGTCTCTGATTTACCACCAATGA
GTTTAGGCTATGTTTATTTACCTGCATTATGCGGGGTTGGACTTACCTCCATTTTTACAACCCGTATTGGTGCAAAGTTA
ACATCGTATTTACCTACACCAACATTAAAAAAAATCTTTGCCGTATTTCTAGTATTTATCGGCACTAAAATGTTCTTAGG
ATAA

Upstream 100 bases:

>100_bases
AAAACTTTTACACCATGATGATGCAGAGAGTATTTTGGCTGATATGATGGTCTTTTTTGAAAAGCATGATCTTTCAGGAT
TCATCAGAGCAGGAAAATAA

Downstream 100 bases:

>100_bases
GAGAGTAATCATGAGTCAGGGGTATTTAAACTTCCCACATATCGATCCAATATTATTTCAAATTGGACCATTGGCGATAC
GTTGGTATGGCTTAATGTAT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN
VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG
IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL
TSYLPTPTLKKIFAVFLVFIGTKMFLG

Sequences:

>Translated_267_residues
MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN
VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG
IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL
TSYLPTPTLKKIFAVFLVFIGTKMFLG
>Mature_267_residues
MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTSLATIILTSASSALNHLRLGN
VEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIVLLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAG
IGGGSLTVPYLNFHGVEMRKAIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL
TSYLPTPTLKKIFAVFLVFIGTKMFLG

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002781 [H]

Pfam domain/function: PF01925 DUF81 [H]

EC number: NA

Molecular weight: Translated: 27647; Mature: 27647

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTS
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LATIILTSASSALNHLRLGNVEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIV
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAGIGGGSLTVPYLNFHGVEMRK
HHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
AIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYLPTPTLKKIFAVFLVFIGTKMFLG
HHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVISVWELFALYLALGSIVGVMAGLLGIGGGLLVVPALLWLLPQAGISPDIVMQMALGTS
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LATIILTSASSALNHLRLGNVEFKLIKGLAPGVIVGGFLGSYAAELIPSQYLPKVFGVIV
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LLLALQMLLALKFTATRPLPSPLKVGISGGFIGVISSLAGIGGGSLTVPYLNFHGVEMRK
HHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
AIGSSSLCGMLIAMAGMIGFIIHGAQVSDLPPMSLGYVYLPALCGVGLTSIFTTRIGAKL
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYLPTPTLKKIFAVFLVFIGTKMFLG
HHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]