Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694016
Identifier: 209694016
GI number: 209694016
Start: 451224
End: 451832
Strand: Reverse
Name: 209694016
Synonym: VSAL_I0415
Alternate gene names: NA
Gene position: 451832-451224 (Counterclockwise)
Preceding gene: 209694017
Following gene: 209694015
Centisome position: 13.59
GC content: 39.08
Gene sequence:
>609_bases ATGGAAAGAAGAGAAACAACTCACTCTTCAATATCCACCGACCGATTAAATAAAAAGGAGTTTTTAATGCCAACACTCGC AACACAAGAGGTACATCAGTCACCCGTTATTAGTGGCTGTATTGATGAACTAACAAAAGGAGTAACACTATTAAATTTAA TTAACGATAGTGATTACATCCACCTTGCATTGCCCTATGTAGAGAGTTCTATTGGCAAGCATTTCCGTCATATTTTGGAT CTTTTTCAAGCATTAATAAAAAAAGAACCCACCGAGCCAATTAATTACAATGTTCGTCGTCGAGGCCATCCGATTGAAAA AAATAAAGACATCGCCATTACTGAACTGAATGACACAATAGATTGGTTAACTCATTTCCCGATAGAGCAACTCACCTCTC AAGTCTCTCTGATCACCGAGGTTTGTCCTTATAAAAAGCAAGACCACATAATGCTTTCAAGTATCGAGCGTGAAATAACC TTTGCGTCACTTCATGCCTCTCATCATTACGCGTTAATAAAAGTCATCACCTTATCCATTGGCATAAACACGCAATCAAC GTTTGGTTTCGCGCCGACAACAACGACCTATTTACGGGGAGAAGCCTAA
Upstream 100 bases:
>100_bases TTTCCACGTTATTACTTCAATACAAAATATTATTTGAAATTGGCGCACTGCAAAAAAAACAAGGTCATCACTCCCCAAAA ATAAAAGAACTATTGGCGGC
Downstream 100 bases:
>100_bases TGTGCACAGTCTCTTGGTTCAACACGCCTACAGGATATGAATTATTTTTTAATCGTGACGAACAGCGGTCTCGCTCTGAT GCATTAACACCTCAGGTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MERRETTHSSISTDRLNKKEFLMPTLATQEVHQSPVISGCIDELTKGVTLLNLINDSDYIHLALPYVESSIGKHFRHILD LFQALIKKEPTEPINYNVRRRGHPIEKNKDIAITELNDTIDWLTHFPIEQLTSQVSLITEVCPYKKQDHIMLSSIEREIT FASLHASHHYALIKVITLSIGINTQSTFGFAPTTTTYLRGEA
Sequences:
>Translated_202_residues MERRETTHSSISTDRLNKKEFLMPTLATQEVHQSPVISGCIDELTKGVTLLNLINDSDYIHLALPYVESSIGKHFRHILD LFQALIKKEPTEPINYNVRRRGHPIEKNKDIAITELNDTIDWLTHFPIEQLTSQVSLITEVCPYKKQDHIMLSSIEREIT FASLHASHHYALIKVITLSIGINTQSTFGFAPTTTTYLRGEA >Mature_202_residues MERRETTHSSISTDRLNKKEFLMPTLATQEVHQSPVISGCIDELTKGVTLLNLINDSDYIHLALPYVESSIGKHFRHILD LFQALIKKEPTEPINYNVRRRGHPIEKNKDIAITELNDTIDWLTHFPIEQLTSQVSLITEVCPYKKQDHIMLSSIEREIT FASLHASHHYALIKVITLSIGINTQSTFGFAPTTTTYLRGEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23009; Mature: 23009
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRETTHSSISTDRLNKKEFLMPTLATQEVHQSPVISGCIDELTKGVTLLNLINDSDYI CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCCEE HLALPYVESSIGKHFRHILDLFQALIKKEPTEPINYNVRRRGHPIEKNKDIAITELNDTI EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEECCHHH DWLTHFPIEQLTSQVSLITEVCPYKKQDHIMLSSIEREITFASLHASHHYALIKVITLSI HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHC GINTQSTFGFAPTTTTYLRGEA CCCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure MERRETTHSSISTDRLNKKEFLMPTLATQEVHQSPVISGCIDELTKGVTLLNLINDSDYI CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEEECCCCEE HLALPYVESSIGKHFRHILDLFQALIKKEPTEPINYNVRRRGHPIEKNKDIAITELNDTI EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEECCHHH DWLTHFPIEQLTSQVSLITEVCPYKKQDHIMLSSIEREITFASLHASHHYALIKVITLSI HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHC GINTQSTFGFAPTTTTYLRGEA CCCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA