Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694017

Identifier: 209694017

GI number: 209694017

Start: 451784

End: 452914

Strand: Reverse

Name: 209694017

Synonym: VSAL_I0416

Alternate gene names: NA

Gene position: 452914-451784 (Counterclockwise)

Preceding gene: 209694018

Following gene: 209694016

Centisome position: 13.62

GC content: 38.55

Gene sequence:

>1131_bases
ATGACAAATAACACCATCAATACAATAGCGAAAGGTCATATAAACGCAGGAATGCCAGAACTCGAATCAGACACGCATCG
AAGTGTGTCTCCTTATGAATTTCTACCAAGTTGGTTTTTTTATACGCCCGTGGTCATTCAGAGTTTTTTTCTTGGCCTAA
AACACTTTGATTTTACGTTGCCTCTTATTGCTAACCCATCAATTAAATTAAGTGGCATGGTTGGTGAATCTAAACACGAT
ATTTTAAACTTAGCAGGGCCAATCGCTCAGCAATGGATATCGCCTTTTACGACGATAACAACAACGAACGATCCTATTTT
ACAACAAACTCAAAACGCCATTGATGAAATGAACCAACATCAATTGTCCTTTCCTGTGGTCGCTAAACCCGATTTAGGCT
GTCGCGGTGTTGGCGTTAAATTAATTCAATCGCCAAAACAGTTAAGTGATTATTTTAATTCTTTTCCTATTCATGCTCGA
TTTCTAATTCAAGAAAAAGCACCTTACGCAGCAGAAGCAGGGATTTTCTATGTGCGTTACCCAAATGAGAAAAAAGGCAA
CATAATTTCCATCACGCTTAAGTACTCTCCCCTCGTGGTTGGTGATGGCATCAGCACATTAAAACAATTAATCGAAAACG
ACAGCAGAGCGGGCCAATTAGCCCACTTATATTTACCCCGTCATGAAAAAAAAATAAACATGGTTTTAGATGAAGGAAAA
GAATTTCAACTTGCCTTTGCTGGAAGCCATAGCCGAGGCTCTATCTTTAGAGATGGCAATCAATACATCACCGATCAATT
GGCGGAACGTTTAGATCAGATTTTTAATGATTTAGAGGGATTTCACTACGGTAGGCTAGATGTGAAATTCAAAGACATTC
AATCTTTAATGAAAGGCGATGATTTTACCATTTTAGAGATTAATGGCGCGAGCAGTGAAGCCGCACATATCTGGGATAGA
AACACCCCACTCAAAACGATTTTTTCCACGTTATTACTTCAATACAAAATATTATTTGAAATTGGCGCACTGCAAAAAAA
ACAAGGTCATCACTCCCCAAAAATAAAAGAACTATTGGCGGCATGGAAAGAAGAGAAACAACTCACTCTTCAATATCCAC
CGACCGATTAA

Upstream 100 bases:

>100_bases
AAGCGAGTGAGCACCAATGGTTATTAATACCGATAATGACATTGGTTTTATTTGCCACAAATCGAATAGCAAAAAAGAAA
ATTTCAAAGGAATTGACCTA

Downstream 100 bases:

>100_bases
ATAAAAAGGAGTTTTTAATGCCAACACTCGCAACACAAGAGGTACATCAGTCACCCGTTATTAGTGGCTGTATTGATGAA
CTAACAAAAGGAGTAACACT

Product: hypothetical protein

Products: NA

Alternate protein names: SNARE Associated Golgi Protein; Alpha/Beta Hydrolase Fold Protein; Transcriptional Activator HlyU; Ribosomal S6 RimK

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHD
ILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHAR
FLIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK
EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDR
NTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD

Sequences:

>Translated_376_residues
MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHD
ILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHAR
FLIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK
EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDR
NTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD
>Mature_375_residues
TNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHDI
LNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARF
LIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGKE
FQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDRN
TPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42461; Mature: 42330

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTL
CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
PLIANPSIKLSGMVGESKHDILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQH
EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
QLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARFLIQEKAPYAAEAGIFYVRY
EECCCEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCHHCCEEEEEC
PNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK
CCCCCCCEEEEEEEECCEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCC
EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGD
EEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC
DFTILEINGASSEAAHIWDRNTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLA
CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AWKEEKQLTLQYPPTD
HHHCCCCEEEECCCCC
>Mature Secondary Structure 
TNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTL
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
PLIANPSIKLSGMVGESKHDILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQH
EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
QLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARFLIQEKAPYAAEAGIFYVRY
EECCCEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCHHCCEEEEEC
PNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK
CCCCCCCEEEEEEEECCEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCC
EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGD
EEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC
DFTILEINGASSEAAHIWDRNTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLA
CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AWKEEKQLTLQYPPTD
HHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA