Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694017
Identifier: 209694017
GI number: 209694017
Start: 451784
End: 452914
Strand: Reverse
Name: 209694017
Synonym: VSAL_I0416
Alternate gene names: NA
Gene position: 452914-451784 (Counterclockwise)
Preceding gene: 209694018
Following gene: 209694016
Centisome position: 13.62
GC content: 38.55
Gene sequence:
>1131_bases ATGACAAATAACACCATCAATACAATAGCGAAAGGTCATATAAACGCAGGAATGCCAGAACTCGAATCAGACACGCATCG AAGTGTGTCTCCTTATGAATTTCTACCAAGTTGGTTTTTTTATACGCCCGTGGTCATTCAGAGTTTTTTTCTTGGCCTAA AACACTTTGATTTTACGTTGCCTCTTATTGCTAACCCATCAATTAAATTAAGTGGCATGGTTGGTGAATCTAAACACGAT ATTTTAAACTTAGCAGGGCCAATCGCTCAGCAATGGATATCGCCTTTTACGACGATAACAACAACGAACGATCCTATTTT ACAACAAACTCAAAACGCCATTGATGAAATGAACCAACATCAATTGTCCTTTCCTGTGGTCGCTAAACCCGATTTAGGCT GTCGCGGTGTTGGCGTTAAATTAATTCAATCGCCAAAACAGTTAAGTGATTATTTTAATTCTTTTCCTATTCATGCTCGA TTTCTAATTCAAGAAAAAGCACCTTACGCAGCAGAAGCAGGGATTTTCTATGTGCGTTACCCAAATGAGAAAAAAGGCAA CATAATTTCCATCACGCTTAAGTACTCTCCCCTCGTGGTTGGTGATGGCATCAGCACATTAAAACAATTAATCGAAAACG ACAGCAGAGCGGGCCAATTAGCCCACTTATATTTACCCCGTCATGAAAAAAAAATAAACATGGTTTTAGATGAAGGAAAA GAATTTCAACTTGCCTTTGCTGGAAGCCATAGCCGAGGCTCTATCTTTAGAGATGGCAATCAATACATCACCGATCAATT GGCGGAACGTTTAGATCAGATTTTTAATGATTTAGAGGGATTTCACTACGGTAGGCTAGATGTGAAATTCAAAGACATTC AATCTTTAATGAAAGGCGATGATTTTACCATTTTAGAGATTAATGGCGCGAGCAGTGAAGCCGCACATATCTGGGATAGA AACACCCCACTCAAAACGATTTTTTCCACGTTATTACTTCAATACAAAATATTATTTGAAATTGGCGCACTGCAAAAAAA ACAAGGTCATCACTCCCCAAAAATAAAAGAACTATTGGCGGCATGGAAAGAAGAGAAACAACTCACTCTTCAATATCCAC CGACCGATTAA
Upstream 100 bases:
>100_bases AAGCGAGTGAGCACCAATGGTTATTAATACCGATAATGACATTGGTTTTATTTGCCACAAATCGAATAGCAAAAAAGAAA ATTTCAAAGGAATTGACCTA
Downstream 100 bases:
>100_bases ATAAAAAGGAGTTTTTAATGCCAACACTCGCAACACAAGAGGTACATCAGTCACCCGTTATTAGTGGCTGTATTGATGAA CTAACAAAAGGAGTAACACT
Product: hypothetical protein
Products: NA
Alternate protein names: SNARE Associated Golgi Protein; Alpha/Beta Hydrolase Fold Protein; Transcriptional Activator HlyU; Ribosomal S6 RimK
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHD ILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHAR FLIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDR NTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD
Sequences:
>Translated_376_residues MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHD ILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHAR FLIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDR NTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD >Mature_375_residues TNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTLPLIANPSIKLSGMVGESKHDI LNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQHQLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARF LIQEKAPYAAEAGIFYVRYPNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGKE FQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGDDFTILEINGASSEAAHIWDRN TPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLAAWKEEKQLTLQYPPTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42461; Mature: 42330
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTL CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE PLIANPSIKLSGMVGESKHDILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQH EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH QLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARFLIQEKAPYAAEAGIFYVRY EECCCEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCHHCCEEEEEC PNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK CCCCCCCEEEEEEEECCEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCC EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGD EEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC DFTILEINGASSEAAHIWDRNTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLA CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AWKEEKQLTLQYPPTD HHHCCCCEEEECCCCC >Mature Secondary Structure TNNTINTIAKGHINAGMPELESDTHRSVSPYEFLPSWFFYTPVVIQSFFLGLKHFDFTL CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE PLIANPSIKLSGMVGESKHDILNLAGPIAQQWISPFTTITTTNDPILQQTQNAIDEMNQH EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH QLSFPVVAKPDLGCRGVGVKLIQSPKQLSDYFNSFPIHARFLIQEKAPYAAEAGIFYVRY EECCCEEECCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCHHCCEEEEEC PNEKKGNIISITLKYSPLVVGDGISTLKQLIENDSRAGQLAHLYLPRHEKKINMVLDEGK CCCCCCCEEEEEEEECCEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCC EFQLAFAGSHSRGSIFRDGNQYITDQLAERLDQIFNDLEGFHYGRLDVKFKDIQSLMKGD EEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCC DFTILEINGASSEAAHIWDRNTPLKTIFSTLLLQYKILFEIGALQKKQGHHSPKIKELLA CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AWKEEKQLTLQYPPTD HHHCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA