Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209694002

Identifier: 209694002

GI number: 209694002

Start: 438951

End: 439223

Strand: Direct

Name: 209694002

Synonym: VSAL_I0401

Alternate gene names: NA

Gene position: 438951-439223 (Clockwise)

Preceding gene: 209694001

Following gene: 209694003

Centisome position: 13.2

GC content: 38.46

Gene sequence:

>273_bases
ATGGATATAACTATGATATTCATATTTGTTAAGGATGCAGTTATGACGACATTAAGTGAATTAAAATTGATGTACCAAGA
AGACCAACTTGTTGAGGCCGTAATTGAATCAGCGATGGTAGAAGATACTTGGATTGTAGAATTTCGCCATGTCCACGGAG
GCCTTGTTTTACTTACGGATATGAAGGGAGGAGAGCTGAAATACAGGGATTTAGAATCGGCGTCAAAAAGCGCATTAGCC
GTTGGATTCAATCAAGTCAGGATTAATGATTAG

Upstream 100 bases:

>100_bases
AAGATAACAAAAATTATTGAGAATAGCGGCGCAGGAAACTGAGTCGCTATTTTTTTATTTAAAATTTGCTCAATCTAGGT
TTATTGACCATGCTTATAGA

Downstream 100 bases:

>100_bases
TGCTTATAATGAACAAATAAAGACAAAGCAAACATTTCTTTCTTCCAAAAAGTTATAAAACATTCTTATCTATTCTTTCT
TGTTATTGGAAAGAGTCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MDITMIFIFVKDAVMTTLSELKLMYQEDQLVEAVIESAMVEDTWIVEFRHVHGGLVLLTDMKGGELKYRDLESASKSALA
VGFNQVRIND

Sequences:

>Translated_90_residues
MDITMIFIFVKDAVMTTLSELKLMYQEDQLVEAVIESAMVEDTWIVEFRHVHGGLVLLTDMKGGELKYRDLESASKSALA
VGFNQVRIND
>Mature_90_residues
MDITMIFIFVKDAVMTTLSELKLMYQEDQLVEAVIESAMVEDTWIVEFRHVHGGLVLLTDMKGGELKYRDLESASKSALA
VGFNQVRIND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10196; Mature: 10196

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDITMIFIFVKDAVMTTLSELKLMYQEDQLVEAVIESAMVEDTWIVEFRHVHGGLVLLTD
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEE
MKGGELKYRDLESASKSALAVGFNQVRIND
CCCCCEEECCCCCCCCCEEEECCEEEEECC
>Mature Secondary Structure
MDITMIFIFVKDAVMTTLSELKLMYQEDQLVEAVIESAMVEDTWIVEFRHVHGGLVLLTD
CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEE
MKGGELKYRDLESASKSALAVGFNQVRIND
CCCCCEEECCCCCCCCCEEEECCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA