| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694001
Identifier: 209694001
GI number: 209694001
Start: 438149
End: 438847
Strand: Direct
Name: 209694001
Synonym: VSAL_I0400
Alternate gene names: NA
Gene position: 438149-438847 (Clockwise)
Preceding gene: 209694000
Following gene: 209694002
Centisome position: 13.18
GC content: 40.06
Gene sequence:
>699_bases ATGAACAAATTATCCCTCACCACTGTTGTTGCTTCTGTTGTCTTAGTATTGGCAGTACCTGCACATTCAGCAGAGAAGGA GTTTACGACTAAAATTGCTATTGATGCGTGGTTCCCTGATGGAAAGGTTGGCTCTAAAGATAATGCCGTTCGTGATAATG ATGTTGATGCATCACAAGCGTTTTCTATTGCATTTGAACATCCATACCCAATTTTACCAAATGTAAAAGTACGTTATACC CCTGTGAAAGCAGATCGTTTTGAATATGATCAAATCGATTATACGGGTTACTATAAATTATTAGACACTAACGGTCTTCA GTTTGATGTAGGTTTGACCTTAACGCAGTTTGCCAATGGTGAATTCAATAAAGGTGGCTCTGTTGATTCAACGCAACCAC ACGATCAAAGCTTTAGTGAAACGGCGATGAACATGTACGCGGATGCGTCACTGCATATTCCAAATACAAACTTCCATATT TTTGGTCAGTATGATTTTGGTAGCAGCAGCGATACTCGAACAATGGATGGTCAAGCAGGGGTTAAGTACATTCTTCCTGT TGATGAAACCGTTGATGTTGAATTCAAGCTGGGTTATCGAGTTATGGATCATGAGTTTGGTTACTTTGAAGGTTTTGATA GCGACCAAGCAAACGTCATGGTAGATGGCTGGTTCGGCGGTTTGTCATTTGATTTCTAA
Upstream 100 bases:
>100_bases ATAAGTTTTATATAGAAAGAAAAAGAAGAGTACATAAATAAACCAAATCGTTTATTATGACCGCAGATGAACCAAATAGC GTCGCAAATGGAGACTACGC
Downstream 100 bases:
>100_bases TCAAAGATAACAAAAATTATTGAGAATAGCGGCGCAGGAAACTGAGTCGCTATTTTTTTATTTAAAATTTGCTCAATCTA GGTTTATTGACCATGCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MNKLSLTTVVASVVLVLAVPAHSAEKEFTTKIAIDAWFPDGKVGSKDNAVRDNDVDASQAFSIAFEHPYPILPNVKVRYT PVKADRFEYDQIDYTGYYKLLDTNGLQFDVGLTLTQFANGEFNKGGSVDSTQPHDQSFSETAMNMYADASLHIPNTNFHI FGQYDFGSSSDTRTMDGQAGVKYILPVDETVDVEFKLGYRVMDHEFGYFEGFDSDQANVMVDGWFGGLSFDF
Sequences:
>Translated_232_residues MNKLSLTTVVASVVLVLAVPAHSAEKEFTTKIAIDAWFPDGKVGSKDNAVRDNDVDASQAFSIAFEHPYPILPNVKVRYT PVKADRFEYDQIDYTGYYKLLDTNGLQFDVGLTLTQFANGEFNKGGSVDSTQPHDQSFSETAMNMYADASLHIPNTNFHI FGQYDFGSSSDTRTMDGQAGVKYILPVDETVDVEFKLGYRVMDHEFGYFEGFDSDQANVMVDGWFGGLSFDF >Mature_232_residues MNKLSLTTVVASVVLVLAVPAHSAEKEFTTKIAIDAWFPDGKVGSKDNAVRDNDVDASQAFSIAFEHPYPILPNVKVRYT PVKADRFEYDQIDYTGYYKLLDTNGLQFDVGLTLTQFANGEFNKGGSVDSTQPHDQSFSETAMNMYADASLHIPNTNFHI FGQYDFGSSSDTRTMDGQAGVKYILPVDETVDVEFKLGYRVMDHEFGYFEGFDSDQANVMVDGWFGGLSFDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25835; Mature: 25835
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLSLTTVVASVVLVLAVPAHSAEKEFTTKIAIDAWFPDGKVGSKDNAVRDNDVDASQA CCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCE FSIAFEHPYPILPNVKVRYTPVKADRFEYDQIDYTGYYKLLDTNGLQFDVGLTLTQFANG EEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECEEEEEECCC EFNKGGSVDSTQPHDQSFSETAMNMYADASLHIPNTNFHIFGQYDFGSSSDTRTMDGQAG CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCEEECCCCC VKYILPVDETVDVEFKLGYRVMDHEFGYFEGFDSDQANVMVDGWFGGLSFDF EEEEEECCCEEEEEEEECEEEECCCCCCCCCCCCCCCCEEEEEEECCEEECC >Mature Secondary Structure MNKLSLTTVVASVVLVLAVPAHSAEKEFTTKIAIDAWFPDGKVGSKDNAVRDNDVDASQA CCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCE FSIAFEHPYPILPNVKVRYTPVKADRFEYDQIDYTGYYKLLDTNGLQFDVGLTLTQFANG EEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECEEEEEECCC EFNKGGSVDSTQPHDQSFSETAMNMYADASLHIPNTNFHIFGQYDFGSSSDTRTMDGQAG CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCEEECCCCC VKYILPVDETVDVEFKLGYRVMDHEFGYFEGFDSDQANVMVDGWFGGLSFDF EEEEEECCCEEEEEEEECEEEECCCCCCCCCCCCCCCCEEEEEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA