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The map label for this gene is ydhC [H]

Identifier: 209552175

GI number: 209552175

Start: 285098

End: 285835

Strand: Reverse

Name: ydhC [H]

Synonym: Rleg2_6333

Alternate gene names: 209552175

Gene position: 285835-285098 (Counterclockwise)

Preceding gene: 209552176

Following gene: 209552172

Centisome position: 92.58

GC content: 55.42

Gene sequence:

>738_bases
ATGAACGGCCTCATTCCCGGCGACCTGAGTATCGCCGACATCGTCATCCGGAAGACGACTGCCGCGCAGCAGGTTGCCGA
CGGCCTGTCGGACCTCATTCTTTCGGGAAGGGTCATGCCGGGGCAGCGCCTTAGGGAAGCCGCGATCGCCTCTGAGCTCG
GCGTGGCGCGCAATACCATCAGGGAGGCAATACGCCTCCTGGAATTTGCTGGCCTCGTGAAAGTCGAGACAAATCGAGGG
GTCGTAGCAATCTCTCCGACCCGCGAAAGCCTGTCAAGCTTGTATGGCGCTCGCCTTGTCCTGGAAGCCAGCGCGGTCGA
ACATCTTACCGACGAGGCCAGCCTCAGAAATGTGCGACAAGCATATGACACCTTCATTGAATCAGTCGCGACGCAGGATG
TAGGCACGATCGTGCGCAATGATCTTGAGTTTCATTCGGCTATCGTCTCGCTGCTCAAGAGCCCTCGGATTGATCATTTT
TATGCCCAGCTGTGCCGTGAGTTGCGCTTCTATCTTGTCTTTCTCTCATTGAAGGACAGCCAGTTCGTTCAGATTTCTGG
TGTCCGGGATGAACACAAACCGATAATGGAAGCTATCGAGGCGAGAGATATTGCGCGAGCCAAACAGGCTGTGATTGATC
ACGTTCGCAATAATGAAGAGCGTGTTGCGTCGCTTATTTTCAGACACCTTCCTCGCGACACGGCTGACATGGAAGCCAAG
TCAGGCCGTTCGAGCTGA

Upstream 100 bases:

>100_bases
GAATCCCTCGCTTGCCGTCCCATCAGGGTTGGTTTACACATGAATGTTCTATTGCACTACAATCGGCCGGCGACCTCCAC
GCCGGTCGCGAGGAGAGTTG

Downstream 100 bases:

>100_bases
GATTGAAAGCAACCGGCCACCGCTGGAGTTGCAATAGCCGTACTGGGACAATCGGTTAGGAGGCGGACGCGAAGTTCAAC
GAATGGGTCGACGCCCAACT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNGLIPGDLSIADIVIRKTTAAQQVADGLSDLILSGRVMPGQRLREAAIASELGVARNTIREAIRLLEFAGLVKVETNRG
VVAISPTRESLSSLYGARLVLEASAVEHLTDEASLRNVRQAYDTFIESVATQDVGTIVRNDLEFHSAIVSLLKSPRIDHF
YAQLCRELRFYLVFLSLKDSQFVQISGVRDEHKPIMEAIEARDIARAKQAVIDHVRNNEERVASLIFRHLPRDTADMEAK
SGRSS

Sequences:

>Translated_245_residues
MNGLIPGDLSIADIVIRKTTAAQQVADGLSDLILSGRVMPGQRLREAAIASELGVARNTIREAIRLLEFAGLVKVETNRG
VVAISPTRESLSSLYGARLVLEASAVEHLTDEASLRNVRQAYDTFIESVATQDVGTIVRNDLEFHSAIVSLLKSPRIDHF
YAQLCRELRFYLVFLSLKDSQFVQISGVRDEHKPIMEAIEARDIARAKQAVIDHVRNNEERVASLIFRHLPRDTADMEAK
SGRSS
>Mature_245_residues
MNGLIPGDLSIADIVIRKTTAAQQVADGLSDLILSGRVMPGQRLREAAIASELGVARNTIREAIRLLEFAGLVKVETNRG
VVAISPTRESLSSLYGARLVLEASAVEHLTDEASLRNVRQAYDTFIESVATQDVGTIVRNDLEFHSAIVSLLKSPRIDHF
YAQLCRELRFYLVFLSLKDSQFVQISGVRDEHKPIMEAIEARDIARAKQAVIDHVRNNEERVASLIFRHLPRDTADMEAK
SGRSS

Specific function: Repressor For The Uxurba Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27147; Mature: 27147

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLIPGDLSIADIVIRKTTAAQQVADGLSDLILSGRVMPGQRLREAAIASELGVARNTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
REAIRLLEFAGLVKVETNRGVVAISPTRESLSSLYGARLVLEASAVEHLTDEASLRNVRQ
HHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYDTFIESVATQDVGTIVRNDLEFHSAIVSLLKSPRIDHFYAQLCRELRFYLVFLSLKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
QFVQISGVRDEHKPIMEAIEARDIARAKQAVIDHVRNNEERVASLIFRHLPRDTADMEAK
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
SGRSS
CCCCC
>Mature Secondary Structure
MNGLIPGDLSIADIVIRKTTAAQQVADGLSDLILSGRVMPGQRLREAAIASELGVARNTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
REAIRLLEFAGLVKVETNRGVVAISPTRESLSSLYGARLVLEASAVEHLTDEASLRNVRQ
HHHHHHHHHHCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYDTFIESVATQDVGTIVRNDLEFHSAIVSLLKSPRIDHFYAQLCRELRFYLVFLSLKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
QFVQISGVRDEHKPIMEAIEARDIARAKQAVIDHVRNNEERVASLIFRHLPRDTADMEAK
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
SGRSS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]