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The map label for this gene is yliC [C]

Identifier: 209552172

GI number: 209552172

Start: 282269

End: 283399

Strand: Reverse

Name: yliC [C]

Synonym: Rleg2_6329

Alternate gene names: 209552172

Gene position: 283399-282269 (Counterclockwise)

Preceding gene: 209552175

Following gene: 209552171

Centisome position: 91.79

GC content: 57.47

Gene sequence:

>1131_bases
ATGGACCAGCATAGGGCAGGGGTGTTCGAAGACGCCTTTCCTCCCGCGCCGGCTGCCTCACGAGCCGCGCGGGGGAATGG
CGTATACCGTCGACTTGTAGGGATCGTAGCTCACCGCCTTGCCTTGGCGGTGGCGTCGCTTTTCGTTGTATCGGTGATAA
TATTTGGCTCGGTCGCATTGTTGCCCGGCAATTACGCGACGGCGGTGCTTGGCCAGTCTGCCACGCCTGAAACAGTCGCA
GCTTTTGAACGGGAACTTGGCCTAGACCGTCCAGCCGTCGAACGCTACACGACCTGGATCAGCGGGGCGGTCCGCGGCGA
TTTTGGCGCGTCGTTCACAAGTAGGGGGGACAACAAGAGGTACGTATCAACCATCGTGGCACCTCGTTTGTTCAACACGA
TGTTCCTTGCCAGCTTCGTCGCGATCGTGGCGGTGCCCCTGGCCATCTTCCTCGGTATCTTATGCGCCTACCATCGGAAC
GGCTGGGTTGACCGGGTTTTGAACAGTACGACCCTCACAGCGATCTCCGTGCCGGAGTTCTTCATTGCCTATATCCTCAC
CTATATAGTGATCATGCGCGACAGTTTCGCGATGACCGGCTGGGCCCAGGCTCTTCCAGCTTGGCTGTCTGAATGGTTCG
CATGGGCTTTTGCCATCGTTCCTGCTTTTCCCATCCTCGCCGACGTGTCTCCCAGTATGGCCTTGAGCGATCGCCTCTGG
ATGTGTGCGCTTCCGGCGTTGACGCTGGGACTGGTGACTGTCGCCTACATGATGCGTATGACCCGTGCCGCGATCATAAA
CCTTTTGGCGACCCCCTACATTGAGATGGCCCATCTCAAAGGCATCAGTCCTTTCTCGATTATCGTTAGACACGCGCTGC
CAAACGCTTGGGGGCCGATCGCGTATGTCGTAACCGTGAATTTGGCATACCTCATCACAGGCGTCGTGGTCGTGGAGGTG
GTATTTGTCTATCCCGGTGCCGGACAGCTCCTAGTCGATGCTGTGCGCTCTCGCGACATACCTGTGGTTCAGGCCTGTAC
GCTAATTTTCGCGAGCGCCTACATCCTTCTCAATCTCGTCACCGATCTCGTCACTATTTTGACCAATCCGAGGCTGCTGC
ACCCAAGATGA

Upstream 100 bases:

>100_bases
ATCTTGGGTGTTGTGTCAAGCTGCCTGGGCAGGCCATCACTGCCGCAGCAGTGCGTCTCTGGACCTCAGTTGGCTGTGAA
TTATGGAAGGGTGGTAGACA

Downstream 100 bases:

>100_bases
GCACTATTCAAAACACTGCTTTGCAAAGGAAGCGCTTCAAGCCGGGCCGCAGCCGTCGGGGCCGTGCCTGGAAAGCGCTT
AGCCGCGCACCACTGAGTGC

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MDQHRAGVFEDAFPPAPAASRAARGNGVYRRLVGIVAHRLALAVASLFVVSVIIFGSVALLPGNYATAVLGQSATPETVA
AFERELGLDRPAVERYTTWISGAVRGDFGASFTSRGDNKRYVSTIVAPRLFNTMFLASFVAIVAVPLAIFLGILCAYHRN
GWVDRVLNSTTLTAISVPEFFIAYILTYIVIMRDSFAMTGWAQALPAWLSEWFAWAFAIVPAFPILADVSPSMALSDRLW
MCALPALTLGLVTVAYMMRMTRAAIINLLATPYIEMAHLKGISPFSIIVRHALPNAWGPIAYVVTVNLAYLITGVVVVEV
VFVYPGAGQLLVDAVRSRDIPVVQACTLIFASAYILLNLVTDLVTILTNPRLLHPR

Sequences:

>Translated_376_residues
MDQHRAGVFEDAFPPAPAASRAARGNGVYRRLVGIVAHRLALAVASLFVVSVIIFGSVALLPGNYATAVLGQSATPETVA
AFERELGLDRPAVERYTTWISGAVRGDFGASFTSRGDNKRYVSTIVAPRLFNTMFLASFVAIVAVPLAIFLGILCAYHRN
GWVDRVLNSTTLTAISVPEFFIAYILTYIVIMRDSFAMTGWAQALPAWLSEWFAWAFAIVPAFPILADVSPSMALSDRLW
MCALPALTLGLVTVAYMMRMTRAAIINLLATPYIEMAHLKGISPFSIIVRHALPNAWGPIAYVVTVNLAYLITGVVVVEV
VFVYPGAGQLLVDAVRSRDIPVVQACTLIFASAYILLNLVTDLVTILTNPRLLHPR
>Mature_376_residues
MDQHRAGVFEDAFPPAPAASRAARGNGVYRRLVGIVAHRLALAVASLFVVSVIIFGSVALLPGNYATAVLGQSATPETVA
AFERELGLDRPAVERYTTWISGAVRGDFGASFTSRGDNKRYVSTIVAPRLFNTMFLASFVAIVAVPLAIFLGILCAYHRN
GWVDRVLNSTTLTAISVPEFFIAYILTYIVIMRDSFAMTGWAQALPAWLSEWFAWAFAIVPAFPILADVSPSMALSDRLW
MCALPALTLGLVTVAYMMRMTRAAIINLLATPYIEMAHLKGISPFSIIVRHALPNAWGPIAYVVTVNLAYLITGVVVVEV
VFVYPGAGQLLVDAVRSRDIPVVQACTLIFASAYILLNLVTDLVTILTNPRLLHPR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=345, Percent_Identity=32.7536231884058, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789965, Length=359, Percent_Identity=29.2479108635098, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1789888, Length=340, Percent_Identity=28.5294117647059, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787497, Length=342, Percent_Identity=25.7309941520468, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787550, Length=282, Percent_Identity=25.177304964539, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788504, Length=374, Percent_Identity=24.331550802139, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40859; Mature: 40859

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQHRAGVFEDAFPPAPAASRAARGNGVYRRLVGIVAHRLALAVASLFVVSVIIFGSVAL
CCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPGNYATAVLGQSATPETVAAFERELGLDRPAVERYTTWISGAVRGDFGASFTSRGDNKR
CCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
YVSTIVAPRLFNTMFLASFVAIVAVPLAIFLGILCAYHRNGWVDRVLNSTTLTAISVPEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECHHHH
FIAYILTYIVIMRDSFAMTGWAQALPAWLSEWFAWAFAIVPAFPILADVSPSMALSDRLW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
MCALPALTLGLVTVAYMMRMTRAAIINLLATPYIEMAHLKGISPFSIIVRHALPNAWGPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCH
AYVVTVNLAYLITGVVVVEVVFVYPGAGQLLVDAVRSRDIPVVQACTLIFASAYILLNLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TDLVTILTNPRLLHPR
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDQHRAGVFEDAFPPAPAASRAARGNGVYRRLVGIVAHRLALAVASLFVVSVIIFGSVAL
CCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPGNYATAVLGQSATPETVAAFERELGLDRPAVERYTTWISGAVRGDFGASFTSRGDNKR
CCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
YVSTIVAPRLFNTMFLASFVAIVAVPLAIFLGILCAYHRNGWVDRVLNSTTLTAISVPEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECHHHH
FIAYILTYIVIMRDSFAMTGWAQALPAWLSEWFAWAFAIVPAFPILADVSPSMALSDRLW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
MCALPALTLGLVTVAYMMRMTRAAIINLLATPYIEMAHLKGISPFSIIVRHALPNAWGPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCH
AYVVTVNLAYLITGVVVVEVVFVYPGAGQLLVDAVRSRDIPVVQACTLIFASAYILLNLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TDLVTILTNPRLLHPR
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]