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The map label for this gene is ygdI

Identifier: 209400704

GI number: 209400704

Start: 3769715

End: 3769942

Strand: Reverse

Name: ygdI

Synonym: ECH74115_4074

Alternate gene names: 209400704

Gene position: 3769942-3769715 (Counterclockwise)

Preceding gene: 209397158

Following gene: 209400092

Centisome position: 67.66

GC content: 46.93

Gene sequence:

>228_bases
ATGAAAAAGACTGCCGCAATTATTTCTGCCTGTATGCTGACTTTTGCCCTGAGCGCCTGTTCCGGTTCGAACTATGTGAT
GCACACCAATGACGGACGTACCATCGTCTCTGACGGCAAACCACAGACTGATAACGATACCGGTATGATTTCGTATAAAG
ACGCTAATGGCAACAAACAGCAGATCAACCGTACCGACGTGAAAGAGATGGTCGAACTGGATCAGTAA

Upstream 100 bases:

>100_bases
CGAAGCCGCGTCAGTAACATATGCTGAATAGTGTTAGGCGTTAATTTTAGCCTGTTAATCAATACTATTAAGATTTATTA
ATCGCTTTAAGGAGAAGATG

Downstream 100 bases:

>100_bases
TTCGCGATCGCAAGGTAAAAAAAAGCACCGCAATTAGGCGGTGCTACATTAATCACTATGGACAGACAGGGTAAATGTAC
AGGAAGTGAAAAAAGGTAGC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ

Sequences:

>Translated_75_residues
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ
>Mature_75_residues
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR

Homologues:

Organism=Escherichia coli, GI87082162, Length=75, Percent_Identity=100, Blast_Score=157, Evalue=2e-40,
Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=59.7222222222222, Blast_Score=91, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGDI_ECOL6 (P65293)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_755255.1
- ProteinModelPortal:   P65293
- SMR:   P65293
- PRIDE:   P65293
- EnsemblBacteria:   EBESCT00000041238
- GeneID:   1039233
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c3380
- GeneTree:   EBGT00050000010076
- HOGENOM:   HBG671268
- OMA:   SSNYVMH
- ProtClustDB:   CLSK880496
- InterPro:   IPR010305

Pfam domain/function: PF06004 DUF903

EC number: NA

Molecular weight: Translated: 8174; Mature: 8174

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCHH
QINRTDVKEMVELDQ
HCCHHHHHHHHHCCC
>Mature Secondary Structure
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCHH
QINRTDVKEMVELDQ
HCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157