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The map label for this gene is ygdL [H]

Identifier: 209397158

GI number: 209397158

Start: 3771833

End: 3772633

Strand: Reverse

Name: ygdL [H]

Synonym: ECH74115_4077

Alternate gene names: 209397158

Gene position: 3772633-3771833 (Counterclockwise)

Preceding gene: 209397699

Following gene: 209400704

Centisome position: 67.71

GC content: 54.56

Gene sequence:

>801_bases
GTGGTAATTAGTGATGCATGGCGTCAGCGTTTTGGTGGCACAGCGCGTCTGTATGGTGAAAAAGCGTTGCAACTGTTTGC
TGACGCGCATATTTGTGTGGTCGGTATTGGCGGTGTCGGTTCCTGGGCGGCGGAAGCGCTGGCGCGCACGGGGATTGGCG
CAATCACGCTTATCGATATGGATGATGTGTGCGTCACCAATACCAATCGGCAAATTCATGCCCTGCGCGATAACGTTGGG
CTGGCAAAAGCGGAAGTCATGGCGGAACGTATTCGCCAGATTAACTCGGAGTGCTGTGTAACGGTGGTGGATGATTTCGT
GACGCCGGATAACGTAGCGCAGCATATGAGCGTGGGTTATTCGTACGTGATTGATGCCATTGATAGTGTACGGCCCAAAG
CGGCGCTGATTGCTTATTGTCGGCGCAATAAAATCCCGCTGGTCACGACCGGTGGCGCGGGTGGGCAGATTGACCCAACG
CAGATTCAGGTTACCGATCTGGCGAAAACGATTCAGGACCCGCTGGCGGCGAAGTTGCGTGAGCGCCTGAAAAGCGATTT
TGGCGTAGTGAAAAACAGTAAAGGTAAGCTCGGTGTGGATTGCGTGTTCTCTACCGAAGCATTGGTGTATCCGCAGTCAG
ACGGTACGGTGTGTGCGATGAAAGCCACGGCGGAAGGACCAAAGCGGATGGATTGTGCATCTGGATTTGGCGCGGCAACG
ATGGTGACCGCCACCTTTGGTTTTGTTGCGGTTTCTCATGCGCTGAAGAAGATGATGGCGAAAGCGGCGCGTCAGGGGTA
A

Upstream 100 bases:

>100_bases
TGCAGGAGTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTATGCGTTTAGGGTGAGGGATAACCTCGCCCTTTTT
AATTCTGAGGTGCTATGTCT

Downstream 100 bases:

>100_bases
ACAATCAGGTCGGATGCGACGCAAACGTCTTATCCGACCCGGTTCTGTGCTTAAACCTGCTTCGTCGCAGCGATAATCGC
CTCGCTTAACGCATTTAACC

Product: ThiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG
LAKAEVMAERIRQINSECCVTVVDDFVTPDNVAQHMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT
QIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAAT
MVTATFGFVAVSHALKKMMAKAARQG

Sequences:

>Translated_266_residues
MVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG
LAKAEVMAERIRQINSECCVTVVDDFVTPDNVAQHMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT
QIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAAT
MVTATFGFVAVSHALKKMMAKAARQG
>Mature_266_residues
MVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG
LAKAEVMAERIRQINSECCVTVVDDFVTPDNVAQHMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT
QIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAAT
MVTATFGFVAVSHALKKMMAKAARQG

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=266, Percent_Identity=98.4962406015038, Blast_Score=535, Evalue=1e-154,
Organism=Escherichia coli, GI1787048, Length=131, Percent_Identity=32.0610687022901, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082356, Length=136, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17540406, Length=131, Percent_Identity=32.0610687022901, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322825, Length=202, Percent_Identity=30.6930693069307, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321790, Length=205, Percent_Identity=24.390243902439, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24582879, Length=124, Percent_Identity=33.0645161290323, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24660640, Length=137, Percent_Identity=29.1970802919708, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28287; Mature: 28287

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM
CCCCHHHHHHCCCCEEHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEC
DDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINSECCVTVVDDFVTPDNVAQHMSVGY
CCEEEECCCCEEEEHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCH
SYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLR
HHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
ERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAAT
HHHHHHHCCEECCCCCCCEEEEEECCEEEEECCCCCEEEEEECCCCCCCCHHHCCCCHHH
MVTATFGFVAVSHALKKMMAKAARQG
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM
CCCCHHHHHHCCCCEEHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEC
DDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINSECCVTVVDDFVTPDNVAQHMSVGY
CCEEEECCCCEEEEHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCH
SYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLR
HHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHH
ERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAAT
HHHHHHHCCEECCCCCCCEEEEEECCEEEEECCCCCEEEEEECCCCCCCCHHHCCCCHHH
MVTATFGFVAVSHALKKMMAKAARQG
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]