Definition Methanopyrus kandleri AV19, complete genome.
Accession NC_003551
Length 1,694,969

Click here to switch to the map view.

The map label for this gene is ycjG [C]

Identifier: 20094006

GI number: 20094006

Start: 530382

End: 531287

Strand: Direct

Name: ycjG [C]

Synonym: MK0568

Alternate gene names: 20094006

Gene position: 530382-531287 (Clockwise)

Preceding gene: 20094004

Following gene: 20094007

Centisome position: 31.29

GC content: 60.38

Gene sequence:

>906_bases
TTGGGTTCGCTGGAGACGGAGCCCGTATCGTTATCTCTCAAGCGGCCGTTCCGGATATCGGGCCGGGAAGTTAGACGAGT
GCGGGGTTATTGGTGCACGTGCGTCATCGAGGGCAACTCCGGGAGAGGATTCGGACTCCGTCGCGGTATCGCCGAGGAGA
TGGCGACACTGGACGCCGTAGCTAGGAGGTATGACGAGCCACTGTGCAGGGTCTGGGGAAGGGAGCCGGCCTCGATCGAG
TCGTTCGCCACCGTGGATCTGGTGGGCGCAGAGCAGGCCGAGAAGCTCGCGCGACGTTACTACCTCAGAGGGTATCGGAA
ACTGAAGGTGAAGGTGGGCGGAGATGACCTGAAGCGGGATCTGGAGCGTGTCGAGGCCTGCGTGAAGTCCGCCGAGTTCG
ACGCCCTCATACTGGACGGAAACGAGGGACTGACGGTCGAAGAAGTATTCCGGTTGCTAGATTTCCTGGACTTCGACGGT
GACGTGTACCTCGAACATCCGACACCACCCGATAGCCTGGAAGAAGTGTGCGAATCTTGCGAGGCACCCGTGATCGTGGA
TGTAATGGATTTGGGAGCCCGATCCATCGACGACGTCCTCGACGTCGCGGAACCCTGCGATATCGTGAACATCAAGACAC
AGGAGGTAGGATTCGTCGGTGGTTTGAGGTTAGCCCGAGACGCCCGGGAAGAGGGTTTCAAAGTGATGGTAGGATGTGCC
GTCGAGAGCTTCTCTTCCATATCTGCCGCCGCTCACTTAGCCGCCGCCGTGGAGGCCGACTTATGCGACCTCGATGGCCA
CCTGTTCCTGGACGAGGATGTCGTGAGCAACCCCGGATACGCACCCGTGATGGTCACCGAGGGTCCCGGATGGGAAGTCC
GCGTGGAGCGGCCTAAGCCCGCGTAA

Upstream 100 bases:

>100_bases
CCAGCAGCGCCTCAAGCACGAACTCGGCCACTTCAGCGATCAACCGGTTTCCCCCGAGGACTTTAACGGCGGAGACGGTG
CGTGGTACCGGGGCGTCACG

Downstream 100 bases:

>100_bases
TAGGACATGAGCTGATGGCTGGAGGTCGTTAGGACACTCCACTCCCTTAACGACTCACTCTTCGACACTTTAACTCGATA
ACCGTCGAGTGGGGGTAATC

Product: O-succinylbenzoate synthase-like protein

Products: NA

Alternate protein names: AE epimerase; AEE [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MGSLETEPVSLSLKRPFRISGREVRRVRGYWCTCVIEGNSGRGFGLRRGIAEEMATLDAVARRYDEPLCRVWGREPASIE
SFATVDLVGAEQAEKLARRYYLRGYRKLKVKVGGDDLKRDLERVEACVKSAEFDALILDGNEGLTVEEVFRLLDFLDFDG
DVYLEHPTPPDSLEEVCESCEAPVIVDVMDLGARSIDDVLDVAEPCDIVNIKTQEVGFVGGLRLARDAREEGFKVMVGCA
VESFSSISAAAHLAAAVEADLCDLDGHLFLDEDVVSNPGYAPVMVTEGPGWEVRVERPKPA

Sequences:

>Translated_301_residues
MGSLETEPVSLSLKRPFRISGREVRRVRGYWCTCVIEGNSGRGFGLRRGIAEEMATLDAVARRYDEPLCRVWGREPASIE
SFATVDLVGAEQAEKLARRYYLRGYRKLKVKVGGDDLKRDLERVEACVKSAEFDALILDGNEGLTVEEVFRLLDFLDFDG
DVYLEHPTPPDSLEEVCESCEAPVIVDVMDLGARSIDDVLDVAEPCDIVNIKTQEVGFVGGLRLARDAREEGFKVMVGCA
VESFSSISAAAHLAAAVEADLCDLDGHLFLDEDVVSNPGYAPVMVTEGPGWEVRVERPKPA
>Mature_300_residues
GSLETEPVSLSLKRPFRISGREVRRVRGYWCTCVIEGNSGRGFGLRRGIAEEMATLDAVARRYDEPLCRVWGREPASIES
FATVDLVGAEQAEKLARRYYLRGYRKLKVKVGGDDLKRDLERVEACVKSAEFDALILDGNEGLTVEEVFRLLDFLDFDGD
VYLEHPTPPDSLEEVCESCEAPVIVDVMDLGARSIDDVLDVAEPCDIVNIKTQEVGFVGGLRLARDAREEGFKVMVGCAV
ESFSSISAAAHLAAAVEADLCDLDGHLFLDEDVVSNPGYAPVMVTEGPGWEVRVERPKPA

Specific function: Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L- Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: NA

Molecular weight: Translated: 33146; Mature: 33015

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLETEPVSLSLKRPFRISGREVRRVRGYWCTCVIEGNSGRGFGLRRGIAEEMATLDAV
CCCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
ARRYDEPLCRVWGREPASIESFATVDLVGAEQAEKLARRYYLRGYRKLKVKVGGDDLKRD
HHHHCCHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
LERVEACVKSAEFDALILDGNEGLTVEEVFRLLDFLDFDGDVYLEHPTPPDSLEEVCESC
HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
EAPVIVDVMDLGARSIDDVLDVAEPCDIVNIKTQEVGFVGGLRLARDAREEGFKVMVGCA
CCCEEEEHHHCCCCHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHCCCEEEEEHH
VESFSSISAAAHLAAAVEADLCDLDGHLFLDEDVVSNPGYAPVMVTEGPGWEVRVERPKP
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCEEEEECCCCCEEEECCCCC
A
C
>Mature Secondary Structure 
GSLETEPVSLSLKRPFRISGREVRRVRGYWCTCVIEGNSGRGFGLRRGIAEEMATLDAV
CCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
ARRYDEPLCRVWGREPASIESFATVDLVGAEQAEKLARRYYLRGYRKLKVKVGGDDLKRD
HHHHCCHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
LERVEACVKSAEFDALILDGNEGLTVEEVFRLLDFLDFDGDVYLEHPTPPDSLEEVCESC
HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC
EAPVIVDVMDLGARSIDDVLDVAEPCDIVNIKTQEVGFVGGLRLARDAREEGFKVMVGCA
CCCEEEEHHHCCCCHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHCCCEEEEEHH
VESFSSISAAAHLAAAVEADLCDLDGHLFLDEDVVSNPGYAPVMVTEGPGWEVRVERPKP
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCEEEEECCCCCEEEECCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]