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The map label for this gene is yrrO [H]

Identifier: 197119913

GI number: 197119913

Start: 4066084

End: 4068462

Strand: Direct

Name: yrrO [H]

Synonym: Gbem_3552

Alternate gene names: 197119913

Gene position: 4066084-4068462 (Clockwise)

Preceding gene: 197119912

Following gene: 197119914

Centisome position: 88.1

GC content: 61.58

Gene sequence:

>2379_bases
ATGCCAATGAAAGAGAAAAAAATCGTCGTTAATAAACCCGAACTTCTCTCCCCCGCGGGCTCCTTGGAGGCTTTTTTCGC
CGCCATGGAGAAAGGGGCCGATGCCGTCTATGCCGGTCTGCGCGACTTTTCCGCGCGCGCCAAGGCGAAGAACTTCACCC
TGGCGCAGATGGAGCGCATGACCGCCTACGCCCACAGCCTCGGGAAGAAGACCTACGTCACCATCAACACCCTGGTAAAG
GAATCTGAACTCCCCCTGCTCATCGACAACCTGGCTGCGCTGGAAGCGATGCGGGTTGACGGGGTCATCCTGCAGGACAT
GGCGGTGGCGCGCCTGGCACGCGAGTTCTTCCCGGGCATCCCGCTGCACGCCTCCACCCAGATGACCATCCACAACTCCT
TGGGGGTGCGCCAGCTCGAGGAGTTGGGATTCGAGCGCGTGGTGCTTGCCCGCGAGCTGCATATCGACGAGATCAAGTCC
ATCGTTGCCTCAAGCAAGGCCGAAATCGAGTGCTTCATCCACGGCGCCCTCTGCTTCTCCTTCTCCGGCCAGTGCTATTT
CTCCTCGTTCCTGGGCGGGCACAGCGGCAACCGCGGCCGCTGCGCGCAGCCCTGCCGCCGCCAGTACAAGCACAAAGGAA
AGGAAGGGTACTACCTTTCCACCAACGACTTCTCCAGCATCGAGATGATCCCCCAGTTGATCGAGGCAGGGGTCGCCTCG
CTCAAGATCGAAGGGAGGATGAAATCCGCGGAGTACGTAGCCAGCGTCATCGGCGCCTACCGCATGGTGCTCGACGCTCC
GCAAGGTTCCTACGACGCCGCGGTCGCCGAGGCGAAGGCGCTCTTGAAACTTTCCTTCGGCCGCGTTCCGACCAAGGGGT
TCCTCGCCTCCCACAACCCGACCGACATCTCCACCCCGTCCATCAAGGGGGCGACCGGCCGCTACTTGGGCGACATCCGC
GAGATGCGCGGCAACCGGATCAGCTTCGACACCCGCGACCGCCTCCACGTTGGGGACCGTATCCGGGTCCAGCCCAAAAG
CGACATGGCCGGGCGCGCCTTCACCATCAAGGAGCTTTACCTCGGCGGCAAGAAGGTGATGAACGTGAAGGAGAACACCC
TGGTCTCCACCCCGTCCCCTTTCCCGTTCAAGCTGGGGGACTCGGTCTTCAAAGTCTCCTCGGAAACCGCCTTCACCATG
AGCGAGAACGCCTGCCTGAAAAGGCTGGAGGGGGCCAAGGGCGACAGCATCCCCTGCATGCTCAAGCTGTCGCACCAGGA
CCAGTCGCTGCGCATAGAGGCTGAGGTGCTGGGGCAACGTTTCGCCACCGAATTCGAGCTGGGTCCGCTGGAACCCTCCC
GCAGCAGCGACATGGAGGGGGTGCTCAAGGCGCAGTTCTCCAAAAGCGGCGACACCCAGTTCACCCTTGCCTCCCTTTCG
GCACCAGATTTCCCGGCCATCATGATCCCCCCTCCCCGGTTGAAGGAAATCCGGCGCAACTTCTACGCCTGGCTCGCGGA
AGCGTCCGTCGGTGCCTTGAAGCAAAGAAGCGCCAGCGGCAGGACCGAAGCGCTCGCCTCCTTGGTGCGCCAAAAATCCG
CGCCGTTTAGGGGCAAGGAAGAGCTTGCCGTCAAGATCGAGCAGGTGCGTGATTGGCACGAACTGCACCGCGACCTGGTC
GACACGGTCGTCCTCCCCGTCTCCAAGGCGAACATGCATCAGTTCCAGGGCTTTGCCAGAAAGCTCAAAGGTAGCGAGGA
CAAGGTGATCTGGCAGCTCCCCTTCATCATCTTCGAGGCGGAACTCCAGTTTTACCGCGACGCGGTGGAGATGATCATAC
GCGGGGGCTTTAAGCGCTTCGAGCTCACCAACCTGTCCCAATTCCAATTTTTCAAGGGGACCGATGCCGAGCTGAACACC
GACTACCGGCTCTTCTCGCTGAACAGCCAGGCCCTTTTATCCTGGCAGGAGCTGGGGGTGAAGCGCGCCACGCTGTACAT
GGAGGACGACCGGGCCAACATGGGGCAGCTCTTGGCGAGCGACCTGAAGATAGAGCGTGGCGTTTTGCTCTACGCGCCCG
TTCCGGTGATCACCTCGAAGATTGCCATCAAGGAGATCAAAGGCGATGCGCCGCTTGCCTCCGACCGCGGCGATCTCTAT
TCAGTAAAAGTTAAAGACCACCTGACCGTGGTTTCGGCCCAGACGCCCTTCGCACTCACCCAGTACCGCAGCGAACTGCG
CCAGATGGGTTGCGGCAGCTTCCTTCTCGACCTGTCGCAGTTGCAGCCGGAGGAGCGGGAGCGGGCACTGGAAGCCTACC
GTAAAGGGGTTGCGGTCCACGCCGCCTCCGAATTCAACTACAGCGCCGGCCTGGTTTAG

Upstream 100 bases:

>100_bases
CATCTCCATCTCGATTCAACACTTTATCTTTATCTTTATCTCAATCTGCCTCTCCGACATCTCCCTTGACCCGCCACCAC
CCTTCCGGTACTCTAGCCAG

Downstream 100 bases:

>100_bases
ACATGGGAATCTTCGACAAGATCAAAGAGCGGATCAACGACAGGCTGAGCGATCCGGCCTTCATGGAACTGGTCCAGGAG
CAGAGCCTCAAGGACCTCCT

Product: peptidase U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 791

Protein sequence:

>792_residues
MPMKEKKIVVNKPELLSPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFTLAQMERMTAYAHSLGKKTYVTINTLVK
ESELPLLIDNLAALEAMRVDGVILQDMAVARLAREFFPGIPLHASTQMTIHNSLGVRQLEELGFERVVLARELHIDEIKS
IVASSKAEIECFIHGALCFSFSGQCYFSSFLGGHSGNRGRCAQPCRRQYKHKGKEGYYLSTNDFSSIEMIPQLIEAGVAS
LKIEGRMKSAEYVASVIGAYRMVLDAPQGSYDAAVAEAKALLKLSFGRVPTKGFLASHNPTDISTPSIKGATGRYLGDIR
EMRGNRISFDTRDRLHVGDRIRVQPKSDMAGRAFTIKELYLGGKKVMNVKENTLVSTPSPFPFKLGDSVFKVSSETAFTM
SENACLKRLEGAKGDSIPCMLKLSHQDQSLRIEAEVLGQRFATEFELGPLEPSRSSDMEGVLKAQFSKSGDTQFTLASLS
APDFPAIMIPPPRLKEIRRNFYAWLAEASVGALKQRSASGRTEALASLVRQKSAPFRGKEELAVKIEQVRDWHELHRDLV
DTVVLPVSKANMHQFQGFARKLKGSEDKVIWQLPFIIFEAELQFYRDAVEMIIRGGFKRFELTNLSQFQFFKGTDAELNT
DYRLFSLNSQALLSWQELGVKRATLYMEDDRANMGQLLASDLKIERGVLLYAPVPVITSKIAIKEIKGDAPLASDRGDLY
SVKVKDHLTVVSAQTPFALTQYRSELRQMGCGSFLLDLSQLQPEERERALEAYRKGVAVHAASEFNYSAGLV

Sequences:

>Translated_792_residues
MPMKEKKIVVNKPELLSPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFTLAQMERMTAYAHSLGKKTYVTINTLVK
ESELPLLIDNLAALEAMRVDGVILQDMAVARLAREFFPGIPLHASTQMTIHNSLGVRQLEELGFERVVLARELHIDEIKS
IVASSKAEIECFIHGALCFSFSGQCYFSSFLGGHSGNRGRCAQPCRRQYKHKGKEGYYLSTNDFSSIEMIPQLIEAGVAS
LKIEGRMKSAEYVASVIGAYRMVLDAPQGSYDAAVAEAKALLKLSFGRVPTKGFLASHNPTDISTPSIKGATGRYLGDIR
EMRGNRISFDTRDRLHVGDRIRVQPKSDMAGRAFTIKELYLGGKKVMNVKENTLVSTPSPFPFKLGDSVFKVSSETAFTM
SENACLKRLEGAKGDSIPCMLKLSHQDQSLRIEAEVLGQRFATEFELGPLEPSRSSDMEGVLKAQFSKSGDTQFTLASLS
APDFPAIMIPPPRLKEIRRNFYAWLAEASVGALKQRSASGRTEALASLVRQKSAPFRGKEELAVKIEQVRDWHELHRDLV
DTVVLPVSKANMHQFQGFARKLKGSEDKVIWQLPFIIFEAELQFYRDAVEMIIRGGFKRFELTNLSQFQFFKGTDAELNT
DYRLFSLNSQALLSWQELGVKRATLYMEDDRANMGQLLASDLKIERGVLLYAPVPVITSKIAIKEIKGDAPLASDRGDLY
SVKVKDHLTVVSAQTPFALTQYRSELRQMGCGSFLLDLSQLQPEERERALEAYRKGVAVHAASEFNYSAGLV
>Mature_791_residues
PMKEKKIVVNKPELLSPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFTLAQMERMTAYAHSLGKKTYVTINTLVKE
SELPLLIDNLAALEAMRVDGVILQDMAVARLAREFFPGIPLHASTQMTIHNSLGVRQLEELGFERVVLARELHIDEIKSI
VASSKAEIECFIHGALCFSFSGQCYFSSFLGGHSGNRGRCAQPCRRQYKHKGKEGYYLSTNDFSSIEMIPQLIEAGVASL
KIEGRMKSAEYVASVIGAYRMVLDAPQGSYDAAVAEAKALLKLSFGRVPTKGFLASHNPTDISTPSIKGATGRYLGDIRE
MRGNRISFDTRDRLHVGDRIRVQPKSDMAGRAFTIKELYLGGKKVMNVKENTLVSTPSPFPFKLGDSVFKVSSETAFTMS
ENACLKRLEGAKGDSIPCMLKLSHQDQSLRIEAEVLGQRFATEFELGPLEPSRSSDMEGVLKAQFSKSGDTQFTLASLSA
PDFPAIMIPPPRLKEIRRNFYAWLAEASVGALKQRSASGRTEALASLVRQKSAPFRGKEELAVKIEQVRDWHELHRDLVD
TVVLPVSKANMHQFQGFARKLKGSEDKVIWQLPFIIFEAELQFYRDAVEMIIRGGFKRFELTNLSQFQFFKGTDAELNTD
YRLFSLNSQALLSWQELGVKRATLYMEDDRANMGQLLASDLKIERGVLLYAPVPVITSKIAIKEIKGDAPLASDRGDLYS
VKVKDHLTVVSAQTPFALTQYRSELRQMGCGSFLLDLSQLQPEERERALEAYRKGVAVHAASEFNYSAGLV

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=367, Percent_Identity=35.6948228882834, Blast_Score=192, Evalue=9e-50,
Organism=Escherichia coli, GI1788397, Length=412, Percent_Identity=29.8543689320388, Blast_Score=159, Evalue=9e-40,
Organism=Escherichia coli, GI1789548, Length=295, Percent_Identity=32.8813559322034, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 87991; Mature: 87860

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMKEKKIVVNKPELLSPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFTLAQMERM
CCCCCCEEEECCCHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
TAYAHSLGKKTYVTINTLVKESELPLLIDNLAALEAMRVDGVILQDMAVARLAREFFPGI
HHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
PLHASTQMTIHNSLGVRQLEELGFERVVLARELHIDEIKSIVASSKAEIECFIHGALCFS
CCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEEEEEEEEEE
FSGQCYFSSFLGGHSGNRGRCAQPCRRQYKHKGKEGYYLSTNDFSSIEMIPQLIEAGVAS
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHE
LKIEGRMKSAEYVASVIGAYRMVLDAPQGSYDAAVAEAKALLKLSFGRVPTKGFLASHNP
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCC
TDISTPSIKGATGRYLGDIREMRGNRISFDTRDRLHVGDRIRVQPKSDMAGRAFTIKELY
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCCCCCCCCEEEHHHHH
LGGKKVMNVKENTLVSTPSPFPFKLGDSVFKVSSETAFTMSENACLKRLEGAKGDSIPCM
CCCHHEECCCCCEEECCCCCCCCCCCCHHEEECCCCEEEECHHHHHHHHCCCCCCCCEEE
LKLSHQDQSLRIEAEVLGQRFATEFELGPLEPSRSSDMEGVLKAQFSKSGDTQFTLASLS
EEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECC
APDFPAIMIPPPRLKEIRRNFYAWLAEASVGALKQRSASGRTEALASLVRQKSAPFRGKE
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCH
ELAVKIEQVRDWHELHRDLVDTVVLPVSKANMHQFQGFARKLKGSEDKVIWQLPFIIFEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHEEHH
ELQFYRDAVEMIIRGGFKRFELTNLSQFQFFKGTDAELNTDYRLFSLNSQALLSWQELGV
HHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCC
KRATLYMEDDRANMGQLLASDLKIERGVLLYAPVPVITSKIAIKEIKGDAPLASDRGDLY
EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCEE
SVKVKDHLTVVSAQTPFALTQYRSELRQMGCGSFLLDLSQLQPEERERALEAYRKGVAVH
EEEEECCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCEEEE
AASEFNYSAGLV
EECCCCCCCCCC
>Mature Secondary Structure 
PMKEKKIVVNKPELLSPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFTLAQMERM
CCCCCEEEECCCHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
TAYAHSLGKKTYVTINTLVKESELPLLIDNLAALEAMRVDGVILQDMAVARLAREFFPGI
HHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
PLHASTQMTIHNSLGVRQLEELGFERVVLARELHIDEIKSIVASSKAEIECFIHGALCFS
CCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEEEEEEEEEE
FSGQCYFSSFLGGHSGNRGRCAQPCRRQYKHKGKEGYYLSTNDFSSIEMIPQLIEAGVAS
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHE
LKIEGRMKSAEYVASVIGAYRMVLDAPQGSYDAAVAEAKALLKLSFGRVPTKGFLASHNP
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCC
TDISTPSIKGATGRYLGDIREMRGNRISFDTRDRLHVGDRIRVQPKSDMAGRAFTIKELY
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCCCCCCCCEEEHHHHH
LGGKKVMNVKENTLVSTPSPFPFKLGDSVFKVSSETAFTMSENACLKRLEGAKGDSIPCM
CCCHHEECCCCCEEECCCCCCCCCCCCHHEEECCCCEEEECHHHHHHHHCCCCCCCCEEE
LKLSHQDQSLRIEAEVLGQRFATEFELGPLEPSRSSDMEGVLKAQFSKSGDTQFTLASLS
EEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECC
APDFPAIMIPPPRLKEIRRNFYAWLAEASVGALKQRSASGRTEALASLVRQKSAPFRGKE
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCH
ELAVKIEQVRDWHELHRDLVDTVVLPVSKANMHQFQGFARKLKGSEDKVIWQLPFIIFEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHEEHH
ELQFYRDAVEMIIRGGFKRFELTNLSQFQFFKGTDAELNTDYRLFSLNSQALLSWQELGV
HHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCC
KRATLYMEDDRANMGQLLASDLKIERGVLLYAPVPVITSKIAIKEIKGDAPLASDRGDLY
EEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCEE
SVKVKDHLTVVSAQTPFALTQYRSELRQMGCGSFLLDLSQLQPEERERALEAYRKGVAVH
EEEEECCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCEEEE
AASEFNYSAGLV
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]