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The map label for this gene is ykpA [H]

Identifier: 197119668

GI number: 197119668

Start: 3797292

End: 3798926

Strand: Direct

Name: ykpA [H]

Synonym: Gbem_3303

Alternate gene names: 197119668

Gene position: 3797292-3798926 (Clockwise)

Preceding gene: 197119663

Following gene: 197119678

Centisome position: 82.28

GC content: 60.31

Gene sequence:

>1635_bases
ATGATCACCGCATCAAACGTCACCCTCTCGTACGGCAAGAGGGTCCTGTTCAAGGACGTAAATATAAAATTCACCCCCGG
CAACTGCTACGGCCTCATCGGGGCCAACGGGGCGGGGAAATCGACCTTCCTGAAAATCCTCTCCGGCGAGATCGAAGCCG
ACAAGGGAGACATCTCCGTCGGCAAAGGACGCATCGCCGTCTTGAAGCAGGACCAGTTCGCCTACGACGAGCACACGGTG
CTGAACACCGTCATCATGGGGCACAAGAAGCTGTTCGACATCATGGCGGAGCGCGAGGCGATCTACTCCAAGCCGGAGTT
CAGCGAAGAGGACGGCATCCGCTCGGCGGAACTGGAAGCGGATTTCGCCGAGATGAACGGCTACGAGGCGGAGAGCGAGG
CGGCGGTACTGCTGAACGGTCTCGGCATCCCCGAGGAGATGCGCGGCAAGCAGATGAAGGAGCTTGAAGGCGGCGAGAAG
GTCCGGGTGCTCCTGGCGCAGGCGCTCTTCGGCAACCCCGACGTGCTCCTCTTGGACGAGCCTACCAACCACCTGGACCT
GAAGTCGATCTCGTGGCTGGAGGAGTTCCTGTTCCGCTTCCAGAACACCGTGATCGTGGTCTCCCACGACCGTCACTTCC
TGAACCAGGTCTGCACCCACATAGCCGACATCGACTTCAGCCGACTCCAGGTCTACGTCGGCAACTACGATTTCTGGTAC
CAGGCAAGCCAGTTGCACCTGAAGCAGCGCCAGGACGACGTCAAGAAGACACAGGACAAGGCGACCGAGCTGAAGGAATT
CATCCAGCGCTTCTCCTCCAACGCTTCCAAGGCGAAGCAGGCGACCTCCAGGAAAAAGCTTTTGGAGAAGCTGACCATCG
AGGACATGCCGGTTTCCTCCAGGAAATACCCCTGGGTGGTTTTCAAACCGGAGCGTCCCTGCGGCGACATCATCCTTGAG
GTGAAGGGGCTTTCCAAGGCGGTGGACGGGGTCCAGATCTTCAAGGATCTCGACCTGATCGTCAGGAAAAACGACAAGAT
CGCCTTCGTGGGGGGCAACTCGCTGGCGAAGACCACCTTGTTCCAGATCCTTGCCGGCGAGCTAGAGCCGGACGAAGGTA
CCTTCCGCTGGGGCGTCACCATCACCAACGCCTACTTCCCCAAGGAGAACGGCGACTATTTCAAGAGCGACCTGAACCTG
ATCGAGTGGCTGGGGCAGTATTCCCCTCCCACCGAAGGCGAAAGCTTCGCCCGCGGCTTCCTGGGCCGCATGCTCTTCTC
CGGCGACGAAGCCCTGAAAAAGACCAGCGTCCTCTCCGGTGGCGAGCGGGTGCGCTGCATGCTCTCCAGGATGATGCTGG
CCGGCGCCAACGTGCTGATGCTGGACGAGCCGACCAACCACCTCGACCTCGAGTCCATCACCGCGCTCAACAACGGGCTC
ATCTCCTACACCGAGGTGGTGCTCTTCGCCTCCCACGACCACGAGTTCGTCTCCACCGTCGCCAACAGGATCATCGAGAT
TCTCCCGAACGGCTGCATCGACCGCGACATGAACTTCGACGACTACCTGGAAGACGCGGACGTCATAGCGGAGCGCGACA
GGCTTTGCAACGGCCACGCGGAGCTGAGCCTGTAG

Upstream 100 bases:

>100_bases
ACGTTGCTTGCCACCTATAGGAAATGATATACATGCAAGGTTCATGACCACGGGGACGCTCCTTGTGGTTTTTTTCATTT
TTCCAAAGGGAGCAGTTCAC

Downstream 100 bases:

>100_bases
CACTTGTAGGAGCACCAGTCATGTTAAAAAGAAAGGGCCTTTCCCATGGGGGAGGCCCTTTCTTTTTGCGCTGATGTTCC
GGCTTGCCCTCCGTAAAAGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MITASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEADKGDISVGKGRIAVLKQDQFAYDEHTV
LNTVIMGHKKLFDIMAEREAIYSKPEFSEEDGIRSAELEADFAEMNGYEAESEAAVLLNGLGIPEEMRGKQMKELEGGEK
VRVLLAQALFGNPDVLLLDEPTNHLDLKSISWLEEFLFRFQNTVIVVSHDRHFLNQVCTHIADIDFSRLQVYVGNYDFWY
QASQLHLKQRQDDVKKTQDKATELKEFIQRFSSNASKAKQATSRKKLLEKLTIEDMPVSSRKYPWVVFKPERPCGDIILE
VKGLSKAVDGVQIFKDLDLIVRKNDKIAFVGGNSLAKTTLFQILAGELEPDEGTFRWGVTITNAYFPKENGDYFKSDLNL
IEWLGQYSPPTEGESFARGFLGRMLFSGDEALKKTSVLSGGERVRCMLSRMMLAGANVLMLDEPTNHLDLESITALNNGL
ISYTEVVLFASHDHEFVSTVANRIIEILPNGCIDRDMNFDDYLEDADVIAERDRLCNGHAELSL

Sequences:

>Translated_544_residues
MITASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEADKGDISVGKGRIAVLKQDQFAYDEHTV
LNTVIMGHKKLFDIMAEREAIYSKPEFSEEDGIRSAELEADFAEMNGYEAESEAAVLLNGLGIPEEMRGKQMKELEGGEK
VRVLLAQALFGNPDVLLLDEPTNHLDLKSISWLEEFLFRFQNTVIVVSHDRHFLNQVCTHIADIDFSRLQVYVGNYDFWY
QASQLHLKQRQDDVKKTQDKATELKEFIQRFSSNASKAKQATSRKKLLEKLTIEDMPVSSRKYPWVVFKPERPCGDIILE
VKGLSKAVDGVQIFKDLDLIVRKNDKIAFVGGNSLAKTTLFQILAGELEPDEGTFRWGVTITNAYFPKENGDYFKSDLNL
IEWLGQYSPPTEGESFARGFLGRMLFSGDEALKKTSVLSGGERVRCMLSRMMLAGANVLMLDEPTNHLDLESITALNNGL
ISYTEVVLFASHDHEFVSTVANRIIEILPNGCIDRDMNFDDYLEDADVIAERDRLCNGHAELSL
>Mature_544_residues
MITASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEADKGDISVGKGRIAVLKQDQFAYDEHTV
LNTVIMGHKKLFDIMAEREAIYSKPEFSEEDGIRSAELEADFAEMNGYEAESEAAVLLNGLGIPEEMRGKQMKELEGGEK
VRVLLAQALFGNPDVLLLDEPTNHLDLKSISWLEEFLFRFQNTVIVVSHDRHFLNQVCTHIADIDFSRLQVYVGNYDFWY
QASQLHLKQRQDDVKKTQDKATELKEFIQRFSSNASKAKQATSRKKLLEKLTIEDMPVSSRKYPWVVFKPERPCGDIILE
VKGLSKAVDGVQIFKDLDLIVRKNDKIAFVGGNSLAKTTLFQILAGELEPDEGTFRWGVTITNAYFPKENGDYFKSDLNL
IEWLGQYSPPTEGESFARGFLGRMLFSGDEALKKTSVLSGGERVRCMLSRMMLAGANVLMLDEPTNHLDLESITALNNGL
ISYTEVVLFASHDHEFVSTVANRIIEILPNGCIDRDMNFDDYLEDADVIAERDRLCNGHAELSL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=31.5789473684211, Blast_Score=258, Evalue=1e-68,
Organism=Homo sapiens, GI27881506, Length=511, Percent_Identity=31.5068493150685, Blast_Score=225, Evalue=7e-59,
Organism=Homo sapiens, GI10947137, Length=511, Percent_Identity=31.5068493150685, Blast_Score=225, Evalue=9e-59,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=28.3609576427256, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=28.3609576427256, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI255708477, Length=209, Percent_Identity=29.6650717703349, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI116734710, Length=202, Percent_Identity=27.7227722772277, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI21536376, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI1787041, Length=524, Percent_Identity=47.1374045801527, Blast_Score=513, Evalue=1e-146,
Organism=Escherichia coli, GI1789751, Length=523, Percent_Identity=32.5047801147228, Blast_Score=268, Evalue=6e-73,
Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=30.5660377358491, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1787182, Length=513, Percent_Identity=31.1890838206628, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1790739, Length=216, Percent_Identity=30.0925925925926, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788450, Length=229, Percent_Identity=26.6375545851528, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786398, Length=232, Percent_Identity=26.7241379310345, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI48994883, Length=234, Percent_Identity=26.4957264957265, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=214, Percent_Identity=26.1682242990654, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=27.2340425531915, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=225, Percent_Identity=21.3333333333333, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=28.2700421940928, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788644, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=26.7543859649123, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=26.9607843137255, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI87081834, Length=218, Percent_Identity=27.9816513761468, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=515, Percent_Identity=33.3980582524272, Blast_Score=247, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17555318, Length=506, Percent_Identity=30.2371541501976, Blast_Score=232, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI17559834, Length=535, Percent_Identity=28.785046728972, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17558664, Length=218, Percent_Identity=30.2752293577982, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=214, Percent_Identity=28.9719626168224, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=213, Percent_Identity=27.2300469483568, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=391, Percent_Identity=23.7851662404092, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=391, Percent_Identity=23.7851662404092, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=391, Percent_Identity=23.7851662404092, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6320874, Length=518, Percent_Identity=32.046332046332, Blast_Score=238, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6321121, Length=522, Percent_Identity=32.183908045977, Blast_Score=231, Evalue=2e-61,
Organism=Saccharomyces cerevisiae, GI6325030, Length=236, Percent_Identity=32.2033898305085, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=404, Percent_Identity=25.7425742574257, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6324314, Length=410, Percent_Identity=25.8536585365854, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6323217, Length=193, Percent_Identity=30.5699481865285, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666836, Length=510, Percent_Identity=32.156862745098, Blast_Score=264, Evalue=9e-71,
Organism=Drosophila melanogaster, GI24642252, Length=516, Percent_Identity=29.4573643410853, Blast_Score=226, Evalue=4e-59,
Organism=Drosophila melanogaster, GI18859989, Length=516, Percent_Identity=29.4573643410853, Blast_Score=226, Evalue=4e-59,
Organism=Drosophila melanogaster, GI24641342, Length=540, Percent_Identity=29.4444444444444, Blast_Score=222, Evalue=4e-58,
Organism=Drosophila melanogaster, GI24641565, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21357907, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136662, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61060; Mature: 61060

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEADKGDISV
CEECCCEEHHCCCEEEEEECEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
GKGRIAVLKQDQFAYDEHTVLNTVIMGHKKLFDIMAEREAIYSKPEFSEEDGIRSAELEA
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC
DFAEMNGYEAESEAAVLLNGLGIPEEMRGKQMKELEGGEKVRVLLAQALFGNPDVLLLDE
CHHHCCCCCCCCCCEEEEECCCCCHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PTNHLDLKSISWLEEFLFRFQNTVIVVSHDRHFLNQVCTHIADIDFSRLQVYVGNYDFWY
CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHEEEEECCEEEEE
QASQLHLKQRQDDVKKTQDKATELKEFIQRFSSNASKAKQATSRKKLLEKLTIEDMPVSS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
RKYPWVVFKPERPCGDIILEVKGLSKAVDGVQIFKDLDLIVRKNDKIAFVGGNSLAKTTL
CCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHH
FQILAGELEPDEGTFRWGVTITNAYFPKENGDYFKSDLNLIEWLGQYSPPTEGESFARGF
HHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGRMLFSGDEALKKTSVLSGGERVRCMLSRMMLAGANVLMLDEPTNHLDLESITALNNGL
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC
ISYTEVVLFASHDHEFVSTVANRIIEILPNGCIDRDMNFDDYLEDADVIAERDRLCNGHA
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
ELSL
CCCC
>Mature Secondary Structure
MITASNVTLSYGKRVLFKDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEADKGDISV
CEECCCEEHHCCCEEEEEECEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
GKGRIAVLKQDQFAYDEHTVLNTVIMGHKKLFDIMAEREAIYSKPEFSEEDGIRSAELEA
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC
DFAEMNGYEAESEAAVLLNGLGIPEEMRGKQMKELEGGEKVRVLLAQALFGNPDVLLLDE
CHHHCCCCCCCCCCEEEEECCCCCHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
PTNHLDLKSISWLEEFLFRFQNTVIVVSHDRHFLNQVCTHIADIDFSRLQVYVGNYDFWY
CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHEEEEECCEEEEE
QASQLHLKQRQDDVKKTQDKATELKEFIQRFSSNASKAKQATSRKKLLEKLTIEDMPVSS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
RKYPWVVFKPERPCGDIILEVKGLSKAVDGVQIFKDLDLIVRKNDKIAFVGGNSLAKTTL
CCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHEEECCCEEEEECCCHHHHHHH
FQILAGELEPDEGTFRWGVTITNAYFPKENGDYFKSDLNLIEWLGQYSPPTEGESFARGF
HHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGRMLFSGDEALKKTSVLSGGERVRCMLSRMMLAGANVLMLDEPTNHLDLESITALNNGL
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC
ISYTEVVLFASHDHEFVSTVANRIIEILPNGCIDRDMNFDDYLEDADVIAERDRLCNGHA
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
ELSL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]