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The map label for this gene is yebC [C]

Identifier: 197119678

GI number: 197119678

Start: 3810274

End: 3811017

Strand: Direct

Name: yebC [C]

Synonym: Gbem_3313

Alternate gene names: 197119678

Gene position: 3810274-3811017 (Clockwise)

Preceding gene: 197119668

Following gene: 197119679

Centisome position: 82.56

GC content: 56.85

Gene sequence:

>744_bases
ATGTCAGGACATAATAAATGGAGCACCATCAAACACAAGAAAGGCGCCGCCGATGCCAAGCGGGGCAAAGTATTCACCAA
GATAATCAAGGAAATCACCGTTGCCGCGAAACTCGGCGGCGGGGATCCGGACGGCAACCCGCGCCTTAGAACCGCTATAG
ATAAGGCAAAAGGCGAGAACATGCCGAAGGACAACGTCGAGCGCGCGATCAAAAAGGGCGTCGGCGGCCTGGAAGGGACC
ACCTACGAAGAGACCACCTACGAGGGTTACGGCCCCGGCGGCACCGCGGTTCTGGTCGAGGTCATGACCGACAACCGCAA
CCGCACCGTCTCCGATGTGAGGAGCATATTCACCAAGTGCAACGGCAACATGGGTGAGTCCGGCTGTGTTTCCTGGCTTT
TCGACAAGAAGGGATTGCTGGTTTTCCCGAAGAGCATCGACTTCGACAAGCTGTTCGAAGCCTCCATCGAGGCGGGCGCC
GACGACGTGACCGATGAAGACGAGCAGTACGAAGTGCTGACCGACCCGGCCGCGTTCCACCAGGTGAAGACTGCCCTGGA
GGGAGCAGGCTTCAAGGCCGAGTCCGCCGAGATCACCATGATTCCGCAGACCATGGTGAAGCTTGAAGGAAAGAACGCAG
AGAACATGCTGAAGCTGATGGACCGTATGGAAGACAACGACGACGTCCAGAACGTCTACGCGAACTTCGACATCTCCGAA
GAAGAGATGGAAAAGATGATGTAG

Upstream 100 bases:

>100_bases
GTGACAGTTTAACTGTCATTTTCCCACTTTACAACCGTCTTTTGGCCATGATAGTATTTCGCGTTTCAATCACCAAACTG
ATTCGGAAAGGAAGCAGCTT

Downstream 100 bases:

>100_bases
CAAAGGCAGGGTCTTTTGTGGTACTAAGAGCGCGGGCTTGTCCCCGCGCTTTTTTTTTAACTTTCAGGATTCAAACATGA
TCATTCTCGGCATCGACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDNVERAIKKGVGGLEGT
TYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKCNGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGA
DDVTDEDEQYEVLTDPAAFHQVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYANFDISE
EEMEKMM

Sequences:

>Translated_247_residues
MSGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDNVERAIKKGVGGLEGT
TYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKCNGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGA
DDVTDEDEQYEVLTDPAAFHQVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYANFDISE
EEMEKMM
>Mature_246_residues
SGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGENMPKDNVERAIKKGVGGLEGTT
YEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKCNGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGAD
DVTDEDEQYEVLTDPAAFHQVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYANFDISEE
EMEKMM

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=32.3886639676113, Blast_Score=150, Evalue=1e-36,
Organism=Escherichia coli, GI1788171, Length=242, Percent_Identity=53.3057851239669, Blast_Score=270, Evalue=5e-74,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=40.7725321888412, Blast_Score=167, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI17556100, Length=243, Percent_Identity=22.6337448559671, Blast_Score=74, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=38.0228136882129, Blast_Score=145, Evalue=8e-36,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=25.3968253968254, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3313_GEOBB (B5EAH0)

Other databases:

- EMBL:   CP001124
- RefSeq:   YP_002140105.1
- ProteinModelPortal:   B5EAH0
- SMR:   B5EAH0
- GeneID:   6780171
- GenomeReviews:   CP001124_GR
- KEGG:   gbm:Gbem_3313
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27148; Mature: 27017

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGEN
CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
MPKDNVERAIKKGVGGLEGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKC
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
NGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGADDVTDEDEQYEVLTDPAAFH
CCCCCCHHHHHHEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHH
QVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYANFDISE
HHHHHHHCCCCCCCCCEEEECHHHHHEECCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCH
EEMEKMM
HHHHHCC
>Mature Secondary Structure 
SGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGEN
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
MPKDNVERAIKKGVGGLEGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFTKC
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
NGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGADDVTDEDEQYEVLTDPAAFH
CCCCCCHHHHHHEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHH
QVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYANFDISE
HHHHHHHCCCCCCCCCEEEECHHHHHEECCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCH
EEMEKMM
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA